PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_106620_fuxy.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARR-B
Protein Properties Length: 547aa    MW: 61304 Da    PI: 6.1791
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_106620_fuxy.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.81e-27315368256
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          +++Wtp+LH+rFv+aveqL G ++A+P++ilelmkv+gLt+++++SHLQkYR++
  Bv5_106620_fuxy.t2 315 LKVDWTPDLHKRFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNIASHLQKYRMH 368
                         5899****************.********************************96 PP
2Response_reg326.5e-12201261109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         +l+ d++ + +  +++ le+ +y +v ++++ +eal  +  k+  +++ ++ +++ + dG   +  +++++ +lp i+ + +   +++ ++
  Bv5_106620_fuxy.t2  20 ILLLDEDTDSAAEIKSKLEEMEY-IVIAFASEHEALCAISSKKesFHVAIVEVSIDNRDGR--CNFLETAK-DLPTIMTSKERCLSTMMKC 106
                         7899999999999**********.888888888888888544446***************5..77787777.9****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         + +Ga +fl+Kp ++e+l++
  Bv5_106620_fuxy.t2 107 IALGAVEFLVKPLSEEKLRN 126
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.54E-1516135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.0E-1516159No hitNo description
SMARTSM004480.004518128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.78119132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-920127IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.60E-921131No hitNo description
PROSITE profilePS5129414.984311370IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-27312371IPR009057Homeodomain-like
SuperFamilySSF466891.67E-17313371IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-25314368IPR006447Myb domain, plants
PfamPF002493.5E-8317366IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MVCTANDLLE WKNFPKGLKI LLLDEDTDSA AEIKSKLEEM EYIVIAFASE HEALCAISSK  60
KESFHVAIVE VSIDNRDGRC NFLETAKDLP TIMTSKERCL STMMKCIALG AVEFLVKPLS  120
EEKLRNIWQH VVHKAFNTSG SAKLESVDSV KEFVGSILEI QQQNIATQTQ VTEKPMRDAE  180
VDQSDHDQSA SGDKFPAPST PQIKQSGRSL DDGDYPDQTN GSPIKEGGEC DEETKSVDNT  240
YNGESSAKME VDPPQPTSVV IVIKEEEDRS DGSRGTDISV PQSHDKEDAN VSLNSGNSNK  300
ESKNVRGTKG SRRKLKVDWT PDLHKRFVQA VEQLGVDQAI PSRILELMKV EGLTRHNIAS  360
HLQKYRMHRR HILPKQEERR WPHPRDSMQR NYYSHRPVMA YPPYHTNHTF TSGQVYPMWG  420
QQGCQPHGYP MWAPPSYPWQ PAENWPWKPY PAMHADAWGC PVMPPPSCPT SAFPQQVQGA  480
YGFHSPDSYG KNSADINPGE EVIDKVVKEA INKPWLPLPI GLKPPSTDSV LAELSRQGIS  540
IIPHHPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-17319368655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677297.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
RefseqXP_010677298.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
RefseqXP_019105079.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA431e-132APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A0K9RR190.0A0A0K9RR19_SPIOL; Uncharacterized protein
TrEMBLA0A0K9RSM00.0A0A0K9RSM0_SPIOL; Uncharacterized protein
STRINGXP_010677297.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-134ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]