PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_106620_fuxy.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | ARR-B | ||||||||
Protein Properties | Length: 546aa MW: 61175.9 Da PI: 6.1791 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.8 | 1e-27 | 315 | 368 | 2 | 56 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +++Wtp+LH+rFv+aveqL G ++A+P++ilelmkv+gLt+++++SHLQkYR++ Bv5_106620_fuxy.t1 315 LKVDWTPDLHKRFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNIASHLQKYRMH 368 5899****************.********************************96 PP | |||||||
2 | Response_reg | 32 | 6.5e-12 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 +l+ d++ + + +++ le+ +y +v ++++ +eal + k+ +++ ++ +++ + dG + +++++ +lp i+ + + +++ ++ Bv5_106620_fuxy.t1 20 ILLLDEDTDSAAEIKSKLEEMEY-IVIAFASEHEALCAISSKKesFHVAIVEVSIDNRDGR--CNFLETAK-DLPTIMTSKERCLSTMMKC 106 7899999999999**********.888888888888888544446***************5..77787777.9****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + +Ga +fl+Kp ++e+l++ Bv5_106620_fuxy.t1 107 IALGAVEFLVKPLSEEKLRN 126 *****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 9.9E-16 | 16 | 159 | No hit | No description |
SuperFamily | SSF52172 | 7.54E-15 | 16 | 135 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 0.0045 | 18 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 20.781 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.0E-9 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.59E-9 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 14.984 | 311 | 370 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-27 | 312 | 371 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.67E-17 | 313 | 371 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-25 | 314 | 368 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-8 | 317 | 366 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MVCTANDLLE WKNFPKGLKI LLLDEDTDSA AEIKSKLEEM EYIVIAFASE HEALCAISSK 60 KESFHVAIVE VSIDNRDGRC NFLETAKDLP TIMTSKERCL STMMKCIALG AVEFLVKPLS 120 EEKLRNIWQH VVHKAFNTSG SAKLESVDSV KEFVGSILEI QQQNIATQTQ VTEKPMRDAE 180 VDQSDHDQSA SGDKFPAPST PQIKQSGRSL DDGDYPDQTN GSPIKEGGEC DEETKSVDNT 240 YNGESSAKME VDPPQPTSVV IVIKEEEDRS DGSRGTDISV PQSHDKEDAN VSLNSGNSNK 300 ESKNVRGTKG SRRKLKVDWT PDLHKRFVQA VEQLGVDQAI PSRILELMKV EGLTRHNIAS 360 HLQKYRMHRR HILPKQEERR WPHPRDSMQR NYYSHRPVMA YPPYHTNHTF TSGQVYPMWG 420 QQGCQPHGYP MWAPPSYPWQ PAENWPWKPY PAMHADAWGC PVMPPPSCPT SAFPQVQGAY 480 GFHSPDSYGK NSADINPGEE VIDKVVKEAI NKPWLPLPIG LKPPSTDSVL AELSRQGISI 540 IPHHPC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 7e-17 | 319 | 368 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019105078.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-132 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A0K9RR19 | 0.0 | A0A0K9RR19_SPIOL; Uncharacterized protein | ||||
TrEMBL | A0A0K9RSM0 | 0.0 | A0A0K9RSM0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010677297.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-135 | ARR-B family protein |
Publications ? help Back to Top | |||
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