PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_104140_hfow.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRF
Protein Properties Length: 466aa    MW: 51389.6 Da    PI: 7.676
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_104140_hfow.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.41.1e-22172217145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgr.srsrkskee 45 
                         d+ep+rCrRtDGKkWRCsr+v +++k+CErH h+gr srsrk++e+
  Bv5_104140_hfow.t2 172 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKGRpSRSRKPVES 217
                         79*********************************95677777765 PP
2QLQ46.51.1e-16105139337
                 QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         FTa Q q+L++Q  +yKy++a++PvPpeLl +++k
  Bv5_104140_hfow.t2 105 FTAGQRQELERQTIIYKYMMASMPVPPELLIPLSK 139
                         ******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.3E-7103139IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.238104139IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-11105137IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.438172217IPR014977WRC domain
PfamPF088791.2E-18173214IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MASGNRTGYG NWELDKGEIN LDYCDVGLGL KLPWQQQQQQ QQQQQHQQQQ QQQQQQSSFS  60
SGRDSITAVP WLQTRQNRQE NRSSSPTISG FHQISRFGDG GRLTFTAGQR QELERQTIIY  120
KYMMASMPVP PELLIPLSKY PSSTITTSSS TSSEVVRKTG VEMRYVTGRG GDPEPWRCRR  180
TDGKKWRCSR DVAPDQKYCE RHSHKGRPSR SRKPVESSSS PSPSILSPPL PLTTTTTNTT  240
TPSVTTSNPI VFTPFAIPKP SSSSFDLPSP SQFNSLPRYP DWFMKKDVAP PNATTAPACL  300
YTQQIGETRA SAVDDHQSCL LSRPFIDAWS LGDHVDPKDA TNTIDNDNNS ITTNKCPTPS  360
SPLNSILPLT LSMSAGFDHD HDHHTSDDNT KDHLERSSLS SASHHHHHQP FNWMNSWISS  420
PPGGPLAEAL CLGISGAGNG RMGSHSDDQL VSPHGHSTSS STTTLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676918.10.0PREDICTED: growth-regulating factor 3 isoform X1
TrEMBLA0A0K9RZ301e-155A0A0K9RZ30_SPIOL; Uncharacterized protein
STRINGXP_010676918.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.14e-28growth-regulating factor 8