PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_104140_hfow.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | GRF | ||||||||
Protein Properties | Length: 465aa MW: 51260.5 Da PI: 7.8768 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71.4 | 1.1e-22 | 171 | 216 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgr.srsrkskee 45 d+ep+rCrRtDGKkWRCsr+v +++k+CErH h+gr srsrk++e+ Bv5_104140_hfow.t1 171 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKGRpSRSRKPVES 216 79*********************************95677777765 PP | |||||||
2 | QLQ | 46.5 | 1.1e-16 | 105 | 139 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FTa Q q+L++Q +yKy++a++PvPpeLl +++k Bv5_104140_hfow.t1 105 FTAGQRQELERQTIIYKYMMASMPVPPELLIPLSK 139 ******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.3E-7 | 103 | 139 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.238 | 104 | 139 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.7E-11 | 105 | 137 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.438 | 171 | 216 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.2E-18 | 172 | 213 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MASGNRTGYG NWELDKGEIN LDYCDVGLGL KLPWQQQQQQ QQQQQHQQQQ QQQQQQSSFS 60 SGRDSITAVP WLQTRQNRQE NRSSSPTISG FHQISRFGDG GRLTFTAGQR QELERQTIIY 120 KYMMASMPVP PELLIPLSKY PSSTITTSSS TSSVVRKTGV EMRYVTGRGG DPEPWRCRRT 180 DGKKWRCSRD VAPDQKYCER HSHKGRPSRS RKPVESSSSP SPSILSPPLP LTTTTTNTTT 240 PSVTTSNPIV FTPFAIPKPS SSSFDLPSPS QFNSLPRYPD WFMKKDVAPP NATTAPACLY 300 TQQIGETRAS AVDDHQSCLL SRPFIDAWSL GDHVDPKDAT NTIDNDNNSI TTNKCPTPSS 360 PLNSILPLTL SMSAGFDHDH DHHTSDDNTK DHLERSSLSS ASHHHHHQPF NWMNSWISSP 420 PGGPLAEALC LGISGAGNGR MGSHSDDQLV SPHGHSTSSS TTTLG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019105027.1 | 0.0 | PREDICTED: growth-regulating factor 3 isoform X2 | ||||
TrEMBL | A0A0K9RZ30 | 1e-156 | A0A0K9RZ30_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676918.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24150.1 | 3e-28 | growth-regulating factor 8 |