PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_102150_cuzi.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

BES1

Protein Properties

Length: 673aa MW: 76299.6 Da PI: 6.5527

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_102150_cuzi.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	153.5	1.6e-47	67	207	2	145
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspes 92 g+gr++++kE+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+V++AL+reAGw+ve+DGttyr++ p + g +s es Bv5_102150_cuzi.t1 67 GKGRREREKEKERTKLRERHRRAITSRMLSGLRQYGNFPLPARADMNDVIAALAREAGWLVEPDGTTYRASPPPI----QLGGLPVRSSES 153 789****************************************************************776666....666777777778 PP DUF822 93 slq.sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 +l+ +s+k++++++p++ + ++ ++++sp+s+ds+ +++ ++ + ++ +s+ Bv5_102150_cuzi.t1 154 PLSaTSPKNCSTKAPLDCQPPVFGVDETLSPASFDSAVVTEMETKSEKFTSTSN 207 877789*****************************99988555544444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	8.2E-48	67	209	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	8.1E-167	235	666	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	1.46E-154	235	669	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	1.5E-77	258	627	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.9E-53	271	285	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.9E-53	292	310	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.9E-53	314	335	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.9E-53	407	429	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.9E-53	480	499	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.9E-53	514	530	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.9E-53	531	542	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.9E-53	549	572	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.9E-53	587	609	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MNGAGENTTP TTFNQHELQQ NPVNPNPNPN PNNLSQQYHL ISPQPQTSRR PRGFAVTGGN 60 SSGIGDGKGR REREKEKERT KLRERHRRAI TSRMLSGLRQ YGNFPLPARA DMNDVIAALA 120 REAGWLVEPD GTTYRASPPP IQLGGLPVRS SESPLSATSP KNCSTKAPLD CQPPVFGVDE 180 TLSPASFDSA VVTEMETKSE KFTSTSNIDS PESLEAHQLI QDVQSDLHEN DFTGTRVPVY 240 IKLSSGIINS YCQLVDPEGI RQELKHLKAL NVEGVVVDCW WGIVEGWNPQ KYIWSGYREL 300 FTIIRELQLK MQVVLAFHEY GGSESGNVFI SLPHWILEIG KDNQDIFFTD REGRRNTECI 360 SWGIDKERVL RGRTGIEVYF DFMRSFRSEF DDIFGGGYIT AVEIGLGASG ELKFPAFPER 420 LGWRYPGIGE FQCYDRYLQQ NLRKAAKLRG HSFWARGPDN AGHYNSRPPE TGFFCERGDY 480 DSYFGRFFLH WYAQILIDHA DNVLSLASLA FEGTQIVVKI PAVYWWYKTP SHAAELTAGY 540 YNPTNRDGYS PVFKVLRKHS VTMKFVCPTS HFRCPENDEL FAYPEGLSWQ VLNVAWDCGL 600 SVAGQNADPC FDRGEHIRMV ETSKPRNDPD QRHFSFFVYQ LPSPFVQRTY CFTELNYFIK 660 SMHGENGCHQ EAA

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MNGAGENTTP TTFNQHELQQ NPVNPNPNPN PNNLSQQYHL ISPQPQTSRR PRGFAVTGGN  60
SSGIGDGKGR REREKEKERT KLRERHRRAI TSRMLSGLRQ YGNFPLPARA DMNDVIAALA  120
REAGWLVEPD GTTYRASPPP IQLGGLPVRS SESPLSATSP KNCSTKAPLD CQPPVFGVDE  180
TLSPASFDSA VVTEMETKSE KFTSTSNIDS PESLEAHQLI QDVQSDLHEN DFTGTRVPVY  240
IKLSSGIINS YCQLVDPEGI RQELKHLKAL NVEGVVVDCW WGIVEGWNPQ KYIWSGYREL  300
FTIIRELQLK MQVVLAFHEY GGSESGNVFI SLPHWILEIG KDNQDIFFTD REGRRNTECI  360
SWGIDKERVL RGRTGIEVYF DFMRSFRSEF DDIFGGGYIT AVEIGLGASG ELKFPAFPER  420
LGWRYPGIGE FQCYDRYLQQ NLRKAAKLRG HSFWARGPDN AGHYNSRPPE TGFFCERGDY  480
DSYFGRFFLH WYAQILIDHA DNVLSLASLA FEGTQIVVKI PAVYWWYKTP SHAAELTAGY  540
YNPTNRDGYS PVFKVLRKHS VTMKFVCPTS HFRCPENDEL FAYPEGLSWQ VLNVAWDCGL  600
SVAGQNADPC FDRGEHIRMV ETSKPRNDPD QRHFSFFVYQ LPSPFVQRTY CFTELNYFIK  660
SMHGENGCHQ EAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wqu_A	1e-118	234	665	10	446	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010676684.1	0.0	PREDICTED: beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A0K9QGA3	0.0	A0A0K9QGA3_SPIOL; Beta-amylase
STRING	XP_010676684.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]