PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_100130_otho.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TALE
Protein Properties Length: 708aa    MW: 80056.8 Da    PI: 6.677
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_100130_otho.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.4e-094434801954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps  ++  LA+++gLt +qV++WF N R +
  Bv5_100130_otho.t1 443 FEHflHPYPSDVDKHILARQTGLTRSQVSNWFINARVR 480
                         664459******************************88 PP
2BELL106.51.7e-34304372472
                BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         elqk+k+kLl +lee+dkrYk y+eq++ v+ssFeavag  +a++Y +lA+ka+SrhFrcL+d i+ qi
  Bv5_100130_otho.t1 304 ELQKRKTKLLAMLEELDKRYKNYCEQMKGVVSSFEAVAGPKAANVYSALASKAMSRHFRCLRDSIVTQI 372
                         89*****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.1E-43212370IPR006563POX domain
PfamPF075261.1E-42219368IPR006563POX domain
PROSITE profilePS5007112.179421484IPR001356Homeobox domain
SMARTSM003894.7E-9424488IPR001356Homeobox domain
CDDcd000862.72E-11424485No hitNo description
SuperFamilySSF466893.08E-17425490IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-28427490IPR009057Homeodomain-like
PfamPF059201.6E-17441480IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MMVSSSSSSF CYSDVVPHLA GVSNHHHHHH LQSFDSNPEI YNLTNGIEMI GFQPKLPPNN  60
NINNNNNNTH HHHHDDDDHN EVQNPNDHLI VAQQQHHQHQ NQEMGFMDES SLRPCVFSCE  120
GNERPSQGLS LSLSSSNPST ISLQSFELRH SFHQRFNLSS PSSNSRDGFL GKSQSFHQHE  180
QHDQQQPQQQ QQQQIFLGKS IVNGSASSSS SMSLQFELMR NSKYMGPTQE LLIEFCNLGT  240
KQNSDESQRK KQPLKKNKEQ WEFEEGEEDD DHNNNNNNTN NASSSSSSRN ANTTTSLYGV  300
SLLELQKRKT KLLAMLEELD KRYKNYCEQM KGVVSSFEAV AGPKAANVYS ALASKAMSRH  360
FRCLRDSIVT QIKATKKAMG EKDSNNATIL GTTRGETPRL RILDQNLRQQ RAYQQMTMME  420
SHPWRPQRGL PERSVSILRA WLFEHFLHPY PSDVDKHILA RQTGLTRSQV SNWFINARVR  480
LWKPMVEQMY LEETKEQQDK NMGSSSDGTD HQLSCTDHLG GILPPPPPQD QKPDPDQLIR  540
IDPGSLSSIV NTTTTTTTTS NRDDPQNRIN HHLQFQQSSQ FIGRVEGFGS MDHLDFPSSS  600
SYNNQQNHHA TPFGSNTNDQ NDNNTPHQTF GGGNNNNVSL TLGLQQHDGN GVSLAFSPAS  660
QTASLFYPRD HMDDCQQVHH QYSLLDGDQG QNLPYRNLMG AQVLQDFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16430488563Homeobox protein Meis2
3k2a_B4e-16430488563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7739691e-128KF773969.1 Beta vulgaris microsatellite SSR-Unigene9269 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676435.10.0PREDICTED: homeobox protein BEL1 homolog
TrEMBLA0A0K9RUP40.0A0A0K9RUP4_SPIOL; Uncharacterized protein
STRINGXP_010676435.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-122TALE family protein