PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_095900_twpc.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | NAC | ||||||||
Protein Properties | Length: 264aa MW: 30256.6 Da PI: 6.3971 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.5 | 1.6e-20 | 9 | 83 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++k wyfF++rd + +gk ++r+t +gyWk+ g +k++ + +g+l+g++kt+v+y+g+ap+ ekt W+m+e+++ Bv4_095900_twpc.t1 9 KGDKIWYFFTPRDMFN-KGKLAKRMTVNGYWKQRGASKNIEDDSGKLIGVQKTFVYYRGNAPNREKTCWLMKEFEA 83 46789*******9986.799******************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.15 | 1 | 108 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.28E-21 | 8 | 106 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-11 | 14 | 82 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MNVARYKAKG DKIWYFFTPR DMFNKGKLAK RMTVNGYWKQ RGASKNIEDD SGKLIGVQKT 60 FVYYRGNAPN REKTCWLMKE FEADASSQPN KGKGVMVLDY VLCSMHKDDK LDRRKSPRKQ 120 AAEAVNNNTG NINHPSNSTM TSVASYDQEQ HNHIGNHEFA QQCYFPNNTD QEVSSLQNYA 180 SMSSLWSDVS YNENNDPLEQ QLMAIPQSFL NPPCSIDSND YQPFPSYDHY PPETELNVDV 240 ETYDFYSAVP PYEKIHVSAN ITPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-14 | 10 | 107 | 69 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-14 | 10 | 107 | 69 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-14 | 10 | 107 | 69 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-14 | 10 | 107 | 69 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-14 | 10 | 107 | 72 | 167 | NAC domain-containing protein 19 |
3swm_B | 3e-14 | 10 | 107 | 72 | 167 | NAC domain-containing protein 19 |
3swm_C | 3e-14 | 10 | 107 | 72 | 167 | NAC domain-containing protein 19 |
3swm_D | 3e-14 | 10 | 107 | 72 | 167 | NAC domain-containing protein 19 |
3swp_A | 3e-14 | 10 | 107 | 72 | 167 | NAC domain-containing protein 19 |
3swp_B | 3e-14 | 10 | 107 | 72 | 167 | NAC domain-containing protein 19 |
3swp_C | 3e-14 | 10 | 107 | 72 | 167 | NAC domain-containing protein 19 |
3swp_D | 3e-14 | 10 | 107 | 72 | 167 | NAC domain-containing protein 19 |
4dul_A | 3e-14 | 10 | 107 | 69 | 164 | NAC domain-containing protein 19 |
4dul_B | 3e-14 | 10 | 107 | 69 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_010694838.1 | 1e-122 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 2e-17 | NAC domain containing protein 32 |