PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv4_094630_tsdh.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

HB-other

Protein Properties

Length: 1166aa MW: 130031 Da PI: 7.6943

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv4_094630_tsdh.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.4	1.6e-10	32	81	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ql++Le l++ +++p++++ ++ A+ lgL+ +q++ W+ rR+++k+ Bv4_094630_tsdh.t2 32 TPLQLQTLEHLYADDKHPTRSRLKDYASGLGLSYEQISRWYVQRRQRDKQ 81 889*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	5.2E-5	27	86	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-9	30	81	IPR009057	Homeodomain-like
CDD	cd00086	6.59E-8	31	80	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-9	31	81	IPR009057	Homeodomain-like
Pfam	PF00046	5.9E-8	32	81	IPR001356	Homeobox domain
PROSITE profile	PS50071	11.71	32	82	IPR001356	Homeobox domain
SMART	SM00571	7.1E-7	396	455	IPR018501	DDT domain
PROSITE profile	PS50827	11.904	396	455	IPR018501	DDT domain
Pfam	PF02791	1.4E-9	401	452	IPR018501	DDT domain
Pfam	PF15612	1.7E-7	662	701	IPR028942	WHIM1 domain
Pfam	PF15613	1.8E-10	795	868	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1166 aa Download sequence Send to blast
MATQTHHIHG PLTLSPTTSL SDFDACNLLP KTPLQLQTLE HLYADDKHPT RSRLKDYASG 60 LGLSYEQISR WYVQRRQRDK QDAARTQGVN VSAQRTAKGK GKMDKKKNLS SLEPGEHENC 120 KRRPFLAQDM LYSPDHIFMK IFRKDGPSLG AEFDPLPCTA FQGRKGIADS RCLEAACEGE 180 QRAQKRRKVT RPAILDSEQR GQMKTPTKKH GKGKGLMSTL QLVNTRASFR DNLGALERGK 240 TLPCKNNHPA KRYGMGKGFM TTSQLANANS KRKTQRRKPS VLRKSGKNVQ KKKPLARQKK 300 VESSRNEKQK ARGGCCKIAL DLGCYENLCS FSALADDEEL ELRECQAGPN PLTCGAHFAT 360 GGSHGCSLCK GLLPKFPLDS VRMRKPLFMD PWKSSSELEK KLFKVFHFLY TYAVILDLCP 420 FTLDEFAKAF HDKDSPLLGK LHVCLLGLLL SDIQKEISTG VSIRSNKHGM FLNLLNMAEA 480 QKFVVNFWRT SLNPLTWTEI LRQVLVAAGF GTKDCNQSKR CLTKEVDHMV KYGLHPGTLK 540 GELFSILFEQ GNKGMKVTEL AKSSQIVDLN LGKTNGGLED SICSILASDI TLFEKISSSA 600 YRLRLPSILM KDEDALSDSE DFGSIDNAEC DSGNSSSRPD MGHQSPESNP LSISCVIDES 660 HPGESWLLGL MEGEYFDLSI EEKLNALLAL VDLVSAGSSI KMEDPSTALT ECVPRIYQHG 720 SGGKIKRSAI SRPSSLTSSC GNDRESRGVE NGHLSSEICP VDSSVVISMM YKEDQYSGKD 780 KGPIGAGNGD LHPMQSIFLG SDRRYNRYWI FLGPCDTDDP GHKRVYFESS EDGQWQVIDS 840 EEALCCLLDT LNGQGRREAV LFASLEKRVP FLLEEMSSSV LDEICVSQST QSGLSEIDRI 900 NEVSLSPISD IDNLSLGEPS CNTVTSSSAA LFKVAKKEEQ KQKYERLQAY DSWIWNGFYS 960 SLHSVRHGKR SFYDSWRRCG SCNDLYWRDE KHCNICHTTF ELDFDLEEKY AIHVAKCQGL 1020 EESDVYPMHK VLPSNLQALK AAIHVIELIM PEDALIGAWK KSAHKLWVRR LRRTSTLHEF 1080 LQVLADFVGS LNVEWVSQSN LTQKCESPSE DFVAHFQNMP QTSSAVALWL VKFDASIALQ 1140 LDEVVVVGTG KGQESVPPVT VSDDEQ

Sequence ? help Back to Top

Protein Sequence Length: 1166 aa Download sequence Send to blast

MATQTHHIHG PLTLSPTTSL SDFDACNLLP KTPLQLQTLE HLYADDKHPT RSRLKDYASG  60
LGLSYEQISR WYVQRRQRDK QDAARTQGVN VSAQRTAKGK GKMDKKKNLS SLEPGEHENC  120
KRRPFLAQDM LYSPDHIFMK IFRKDGPSLG AEFDPLPCTA FQGRKGIADS RCLEAACEGE  180
QRAQKRRKVT RPAILDSEQR GQMKTPTKKH GKGKGLMSTL QLVNTRASFR DNLGALERGK  240
TLPCKNNHPA KRYGMGKGFM TTSQLANANS KRKTQRRKPS VLRKSGKNVQ KKKPLARQKK  300
VESSRNEKQK ARGGCCKIAL DLGCYENLCS FSALADDEEL ELRECQAGPN PLTCGAHFAT  360
GGSHGCSLCK GLLPKFPLDS VRMRKPLFMD PWKSSSELEK KLFKVFHFLY TYAVILDLCP  420
FTLDEFAKAF HDKDSPLLGK LHVCLLGLLL SDIQKEISTG VSIRSNKHGM FLNLLNMAEA  480
QKFVVNFWRT SLNPLTWTEI LRQVLVAAGF GTKDCNQSKR CLTKEVDHMV KYGLHPGTLK  540
GELFSILFEQ GNKGMKVTEL AKSSQIVDLN LGKTNGGLED SICSILASDI TLFEKISSSA  600
YRLRLPSILM KDEDALSDSE DFGSIDNAEC DSGNSSSRPD MGHQSPESNP LSISCVIDES  660
HPGESWLLGL MEGEYFDLSI EEKLNALLAL VDLVSAGSSI KMEDPSTALT ECVPRIYQHG  720
SGGKIKRSAI SRPSSLTSSC GNDRESRGVE NGHLSSEICP VDSSVVISMM YKEDQYSGKD  780
KGPIGAGNGD LHPMQSIFLG SDRRYNRYWI FLGPCDTDDP GHKRVYFESS EDGQWQVIDS  840
EEALCCLLDT LNGQGRREAV LFASLEKRVP FLLEEMSSSV LDEICVSQST QSGLSEIDRI  900
NEVSLSPISD IDNLSLGEPS CNTVTSSSAA LFKVAKKEEQ KQKYERLQAY DSWIWNGFYS  960
SLHSVRHGKR SFYDSWRRCG SCNDLYWRDE KHCNICHTTF ELDFDLEEKY AIHVAKCQGL  1020
EESDVYPMHK VLPSNLQALK AAIHVIELIM PEDALIGAWK KSAHKLWVRR LRRTSTLHEF  1080
LQVLADFVGS LNVEWVSQSN LTQKCESPSE DFVAHFQNMP QTSSAVALWL VKFDASIALQ  1140
LDEVVVVGTG KGQESVPPVT VSDDEQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010694636.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A0K9RYZ9	0.0	A0A0K9RYZ9_SPIOL; Uncharacterized protein
STRING	XP_010694636.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator