PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv4_094630_tsdh.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

HB-other

Protein Properties

Length: 1163aa MW: 129790 Da PI: 7.6943

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv4_094630_tsdh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.4	1.6e-10	32	81	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ql++Le l++ +++p++++ ++ A+ lgL+ +q++ W+ rR+++k+ Bv4_094630_tsdh.t1 32 TPLQLQTLEHLYADDKHPTRSRLKDYASGLGLSYEQISRWYVQRRQRDKQ 81 889*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	5.2E-5	27	86	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-9	30	81	IPR009057	Homeodomain-like
CDD	cd00086	6.75E-8	31	80	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-9	31	81	IPR009057	Homeodomain-like
Pfam	PF00046	5.9E-8	32	81	IPR001356	Homeobox domain
PROSITE profile	PS50071	11.71	32	82	IPR001356	Homeobox domain
PROSITE profile	PS50827	11.904	393	452	IPR018501	DDT domain
SMART	SM00571	7.1E-7	393	452	IPR018501	DDT domain
Pfam	PF02791	1.4E-9	398	449	IPR018501	DDT domain
Pfam	PF15612	1.6E-7	659	698	IPR028942	WHIM1 domain
Pfam	PF15613	1.8E-10	792	865	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence Send to blast
MATQTHHIHG PLTLSPTTSL SDFDACNLLP KTPLQLQTLE HLYADDKHPT RSRLKDYASG 60 LGLSYEQISR WYVQRRQRDK QDAARTQGVN VSAQRTAKGK GKMDKKKNLS SLEPGEHENC 120 KRRPFLAQDM LYSPDHIFMK IFRKDGPSLG AEFDPLPCTA FQGRKDSRCL EAACEGEQRA 180 QKRRKVTRPA ILDSEQRGQM KTPTKKHGKG KGLMSTLQLV NTRASFRDNL GALERGKTLP 240 CKNNHPAKRY GMGKGFMTTS QLANANSKRK TQRRKPSVLR KSGKNVQKKK PLARQKKVES 300 SRNEKQKARG GCCKIALDLG CYENLCSFSA LADDEELELR ECQAGPNPLT CGAHFATGGS 360 HGCSLCKGLL PKFPLDSVRM RKPLFMDPWK SSSELEKKLF KVFHFLYTYA VILDLCPFTL 420 DEFAKAFHDK DSPLLGKLHV CLLGLLLSDI QKEISTGVSI RSNKHGMFLN LLNMAEAQKF 480 VVNFWRTSLN PLTWTEILRQ VLVAAGFGTK DCNQSKRCLT KEVDHMVKYG LHPGTLKGEL 540 FSILFEQGNK GMKVTELAKS SQIVDLNLGK TNGGLEDSIC SILASDITLF EKISSSAYRL 600 RLPSILMKDE DALSDSEDFG SIDNAECDSG NSSSRPDMGH QSPESNPLSI SCVIDESHPG 660 ESWLLGLMEG EYFDLSIEEK LNALLALVDL VSAGSSIKME DPSTALTECV PRIYQHGSGG 720 KIKRSAISRP SSLTSSCGND RESRGVENGH LSSEICPVDS SVVISMMYKE DQYSGKDKGP 780 IGAGNGDLHP MQSIFLGSDR RYNRYWIFLG PCDTDDPGHK RVYFESSEDG QWQVIDSEEA 840 LCCLLDTLNG QGRREAVLFA SLEKRVPFLL EEMSSSVLDE ICVSQSTQSG LSEIDRINEV 900 SLSPISDIDN LSLGEPSCNT VTSSSAALFK VAKKEEQKQK YERLQAYDSW IWNGFYSSLH 960 SVRHGKRSFY DSWRRCGSCN DLYWRDEKHC NICHTTFELD FDLEEKYAIH VAKCQGLEES 1020 DVYPMHKVLP SNLQALKAAI HVIELIMPED ALIGAWKKSA HKLWVRRLRR TSTLHEFLQV 1080 LADFVGSLNV EWVSQSNLTQ KCESPSEDFV AHFQNMPQTS SAVALWLVKF DASIALQLDE 1140 VVVVGTGKGQ ESVPPVTVSD DEQ

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence Send to blast

MATQTHHIHG PLTLSPTTSL SDFDACNLLP KTPLQLQTLE HLYADDKHPT RSRLKDYASG  60
LGLSYEQISR WYVQRRQRDK QDAARTQGVN VSAQRTAKGK GKMDKKKNLS SLEPGEHENC  120
KRRPFLAQDM LYSPDHIFMK IFRKDGPSLG AEFDPLPCTA FQGRKDSRCL EAACEGEQRA  180
QKRRKVTRPA ILDSEQRGQM KTPTKKHGKG KGLMSTLQLV NTRASFRDNL GALERGKTLP  240
CKNNHPAKRY GMGKGFMTTS QLANANSKRK TQRRKPSVLR KSGKNVQKKK PLARQKKVES  300
SRNEKQKARG GCCKIALDLG CYENLCSFSA LADDEELELR ECQAGPNPLT CGAHFATGGS  360
HGCSLCKGLL PKFPLDSVRM RKPLFMDPWK SSSELEKKLF KVFHFLYTYA VILDLCPFTL  420
DEFAKAFHDK DSPLLGKLHV CLLGLLLSDI QKEISTGVSI RSNKHGMFLN LLNMAEAQKF  480
VVNFWRTSLN PLTWTEILRQ VLVAAGFGTK DCNQSKRCLT KEVDHMVKYG LHPGTLKGEL  540
FSILFEQGNK GMKVTELAKS SQIVDLNLGK TNGGLEDSIC SILASDITLF EKISSSAYRL  600
RLPSILMKDE DALSDSEDFG SIDNAECDSG NSSSRPDMGH QSPESNPLSI SCVIDESHPG  660
ESWLLGLMEG EYFDLSIEEK LNALLALVDL VSAGSSIKME DPSTALTECV PRIYQHGSGG  720
KIKRSAISRP SSLTSSCGND RESRGVENGH LSSEICPVDS SVVISMMYKE DQYSGKDKGP  780
IGAGNGDLHP MQSIFLGSDR RYNRYWIFLG PCDTDDPGHK RVYFESSEDG QWQVIDSEEA  840
LCCLLDTLNG QGRREAVLFA SLEKRVPFLL EEMSSSVLDE ICVSQSTQSG LSEIDRINEV  900
SLSPISDIDN LSLGEPSCNT VTSSSAALFK VAKKEEQKQK YERLQAYDSW IWNGFYSSLH  960
SVRHGKRSFY DSWRRCGSCN DLYWRDEKHC NICHTTFELD FDLEEKYAIH VAKCQGLEES  1020
DVYPMHKVLP SNLQALKAAI HVIELIMPED ALIGAWKKSA HKLWVRRLRR TSTLHEFLQV  1080
LADFVGSLNV EWVSQSNLTQ KCESPSEDFV AHFQNMPQTS SAVALWLVKF DASIALQLDE  1140
VVVVGTGKGQ ESVPPVTVSD DEQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010694637.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	A0A0K9RYZ9	0.0	A0A0K9RYZ9_SPIOL; Uncharacterized protein
STRING	XP_010694636.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator