PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_094630_tsdh.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | HB-other | ||||||||
Protein Properties | Length: 1163aa MW: 129790 Da PI: 7.6943 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.4 | 1.6e-10 | 32 | 81 | 8 | 57 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ql++Le l++ +++p++++ ++ A+ lgL+ +q++ W+ rR+++k+ Bv4_094630_tsdh.t1 32 TPLQLQTLEHLYADDKHPTRSRLKDYASGLGLSYEQISRWYVQRRQRDKQ 81 889*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 5.2E-5 | 27 | 86 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-9 | 30 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.75E-8 | 31 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-9 | 31 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.9E-8 | 32 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 11.71 | 32 | 82 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 11.904 | 393 | 452 | IPR018501 | DDT domain |
SMART | SM00571 | 7.1E-7 | 393 | 452 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.4E-9 | 398 | 449 | IPR018501 | DDT domain |
Pfam | PF15612 | 1.6E-7 | 659 | 698 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.8E-10 | 792 | 865 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1163 aa Download sequence Send to blast |
MATQTHHIHG PLTLSPTTSL SDFDACNLLP KTPLQLQTLE HLYADDKHPT RSRLKDYASG 60 LGLSYEQISR WYVQRRQRDK QDAARTQGVN VSAQRTAKGK GKMDKKKNLS SLEPGEHENC 120 KRRPFLAQDM LYSPDHIFMK IFRKDGPSLG AEFDPLPCTA FQGRKDSRCL EAACEGEQRA 180 QKRRKVTRPA ILDSEQRGQM KTPTKKHGKG KGLMSTLQLV NTRASFRDNL GALERGKTLP 240 CKNNHPAKRY GMGKGFMTTS QLANANSKRK TQRRKPSVLR KSGKNVQKKK PLARQKKVES 300 SRNEKQKARG GCCKIALDLG CYENLCSFSA LADDEELELR ECQAGPNPLT CGAHFATGGS 360 HGCSLCKGLL PKFPLDSVRM RKPLFMDPWK SSSELEKKLF KVFHFLYTYA VILDLCPFTL 420 DEFAKAFHDK DSPLLGKLHV CLLGLLLSDI QKEISTGVSI RSNKHGMFLN LLNMAEAQKF 480 VVNFWRTSLN PLTWTEILRQ VLVAAGFGTK DCNQSKRCLT KEVDHMVKYG LHPGTLKGEL 540 FSILFEQGNK GMKVTELAKS SQIVDLNLGK TNGGLEDSIC SILASDITLF EKISSSAYRL 600 RLPSILMKDE DALSDSEDFG SIDNAECDSG NSSSRPDMGH QSPESNPLSI SCVIDESHPG 660 ESWLLGLMEG EYFDLSIEEK LNALLALVDL VSAGSSIKME DPSTALTECV PRIYQHGSGG 720 KIKRSAISRP SSLTSSCGND RESRGVENGH LSSEICPVDS SVVISMMYKE DQYSGKDKGP 780 IGAGNGDLHP MQSIFLGSDR RYNRYWIFLG PCDTDDPGHK RVYFESSEDG QWQVIDSEEA 840 LCCLLDTLNG QGRREAVLFA SLEKRVPFLL EEMSSSVLDE ICVSQSTQSG LSEIDRINEV 900 SLSPISDIDN LSLGEPSCNT VTSSSAALFK VAKKEEQKQK YERLQAYDSW IWNGFYSSLH 960 SVRHGKRSFY DSWRRCGSCN DLYWRDEKHC NICHTTFELD FDLEEKYAIH VAKCQGLEES 1020 DVYPMHKVLP SNLQALKAAI HVIELIMPED ALIGAWKKSA HKLWVRRLRR TSTLHEFLQV 1080 LADFVGSLNV EWVSQSNLTQ KCESPSEDFV AHFQNMPQTS SAVALWLVKF DASIALQLDE 1140 VVVVGTGKGQ ESVPPVTVSD DEQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010694637.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT3 isoform X2 | ||||
TrEMBL | A0A0K9RYZ9 | 0.0 | A0A0K9RYZ9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694636.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 0.0 | Homeodomain-like transcriptional regulator |