PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_092350_tjty.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 579aa    MW: 64816.9 Da    PI: 6.6183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_092350_tjty.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4263.1e-1302095781373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+elL+ecA+a+s++ l   ++l+++ ++ +s +g+p+qRl ay+ e+L ar  +s++++y+al+++e      ++ l+++++++e++P+l
  Bv4_092350_tjty.t1 209 LKELLIECARALSDNRLDDFDELVEQARKEVSISGQPIQRLGAYMIEGLVARKESSGNNIYRALRCKEPL---GKDLLSFMHILYEICPYL 296
                         5799*****************************************************************8...99**************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  +  +le++g+rLa++ e+ ++++ef++
  Bv4_092350_tjty.t1 297 KFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWLTLLQALAARPGGAPHVRITGIDDPVSQyaRGASLEAVGKRLASLSEKYNISVEFHA 387
                         ***********************************************************9999999************************* PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v   l d++ e+L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vksl +kv ++veqe+++n+++Fl+rf+eal+yysa+f+s+
  Bv4_092350_tjty.t1 388 -VPVFLPDVTREMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLGSKVTTLVEQESNTNTTPFLTRFTEALSYYSAMFESI 477
                         .7999************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ++++pr+ +eri+vE+++l+++ivnv+aceg+er+erhe l+kW++r+++aGFk++pls+++++ ++ llr ++ + y++ e++g+++lgW
  Bv4_092350_tjty.t1 478 DVTMPRDRKERINVEQHCLAKDIVNVIACEGKERVERHELLGKWKSRFTMAGFKQYPLSSYVNSVIRGLLRCYS-EHYTLVEKDGAMLLGW 567
                         **********************************************************************9999.66************** PP

                GRAS 363 kdrpLvsvSaW 373
                         kdr L+s+SaW
  Bv4_092350_tjty.t1 568 KDRMLISASAW 578
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.667183560IPR005202Transcription factor GRAS
PfamPF035141.1E-127209578IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MDSHKVFGYN TTSADSSYMT SQHTSSPIPN RLFGPLKFHL RNSPISPFST HFECETATTL  60
TDSREHHSSS ESLSAKSPSC NSLLETNSYH QRFNSSPSED SRQSPVLPTT SGTLFSQNSD  120
YEVNIKHALQ ELETVLMGDE ATGGGSRHSH IPGQRSGSWN RDPQSSHGAQ LQSSSPSLER  180
RSEDEGQSEK RHKAMEEEIV QHKIPSGNLK ELLIECARAL SDNRLDDFDE LVEQARKEVS  240
ISGQPIQRLG AYMIEGLVAR KESSGNNIYR ALRCKEPLGK DLLSFMHILY EICPYLKFGY  300
MAANGAIAEA CRNEDRIHII DFQIAQGTQW LTLLQALAAR PGGAPHVRIT GIDDPVSQYA  360
RGASLEAVGK RLASLSEKYN ISVEFHAVPV FLPDVTREML DVRPGEALAV NFPLQLHHTP  420
DESVDVNNPR DGLLRMVKSL GSKVTTLVEQ ESNTNTTPFL TRFTEALSYY SAMFESIDVT  480
MPRDRKERIN VEQHCLAKDI VNVIACEGKE RVERHELLGK WKSRFTMAGF KQYPLSSYVN  540
SVIRGLLRCY SEHYTLVEKD GAMLLGWKDR MLISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-612065791375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694285.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_019108087.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0K9RKI50.0A0A0K9RKI5_SPIOL; Uncharacterized protein
STRINGXP_010694285.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-165scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]