 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bv4_087440_twas.t1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
| Family |
NAC |
| Protein Properties |
Length: 364aa MW: 41055.8 Da PI: 9.294 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bv4_087440_twas.t1 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.1 | 1.5e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk
Bv4_087440_twas.t1 14 LPPGFRFYPTDEELLVQYLCRKVAGHQFSL-QIIAEIDLYKFDPWVLPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKI 103
79***************************9.89***************8777899***********************************9 PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
Bv4_087440_twas.t1 104 ITT-QGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139
999.999****************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 364 aa
Download sequence Send
to blast |
MGVQDKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHQ FSLQIIAEID LYKFDPWVLP 60
SKAMFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTQGRK VGIKKALVFY 120
IGKAPKGTKT NWIMHEYRLT EPTRKSGSSK LDDWVLCRIY KKNSSAAKPT ISKEHSTGGS 180
SSSSSSHLDD VLESLPEIDD RSFALPRMNS LKNNVGHQQQ QQNQHQQQNQ QQHQNDKFNL 240
QHFGSGSFDW AVLAGLTSGP EFAFNGSTQP QQGQVNNNNN AMDMFIPSLP PLSQVESPVD 300
TKVRITSGLV DDEVQSGITS HRVNPSYYNH NTNMFTQSYN NSNSVDPFVM GHPNQFSFGF 360
GYRQ
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-111 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-111 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-111 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-111 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-111 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-111 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ933532 | 0.0 | KJ933532.1 Suaeda liaotungensis putative NAC transcription factor (NAC10) mRNA, complete cds. |
