PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv4_087410_qejj.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 410aa MW: 46041.4 Da PI: 7.9104

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv4_087410_qejj.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.1	9.5e-55	24	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv+yLk+kv++++l++ ++i+evd+yk++Pw+Lp k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+ Bv4_087410_qejj.t1 24 LPPGFRFHPTDEELVVHYLKRKVQSTSLPV-SIIAEVDLYKFDPWELPDKAVFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 113 79**************************.89***********7777899******************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 vls+++++vg+kk Lvfy g+ p+g+kt+W+mheyrl Bv4_087410_qejj.t1 114 VLSSGSQKVGVKKALVFYGGKPPRGVKTNWIMHEYRL 150 *********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-65	19	185	IPR003441	NAC domain
PROSITE profile	PS51005	61.637	24	185	IPR003441	NAC domain
Pfam	PF02365	1.4E-28	25	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MDNTHSPATG GSHHPPEPPP QPHLPPGFRF HPTDEELVVH YLKRKVQSTS LPVSIIAEVD 60 LYKFDPWELP DKAVFGEQEW YFFSPRDRKY PNGARPNRAA TSGYWKATGT DKPVLSSGSQ 120 KVGVKKALVF YGGKPPRGVK TNWIMHEYRL VDNKPNNKPP AYDLCHNKKG SLRLDDWVLC 180 RIYKKNNTNR PMDHEREDSM EDMMMMGTPM SMSMSMSMPS SISNMGQHHH LHNHHPLTKV 240 TGSLNYTSLL DSHVDDQHGI YEGMMGGHAM DPPTNISHMP LKRTLPSLYW GGNDHNTGGD 300 IGCSHSPSKR LSMLQMSNEA NNNNNNNNNN NTKIAGNNNS SEESGARSDH HVNNNNNNNN 360 NNMSSMSSLL NQLPSEIPPP LHQQQQPMLG SLSDGVFRQP YPLPGLNWYS

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MDNTHSPATG GSHHPPEPPP QPHLPPGFRF HPTDEELVVH YLKRKVQSTS LPVSIIAEVD  60
LYKFDPWELP DKAVFGEQEW YFFSPRDRKY PNGARPNRAA TSGYWKATGT DKPVLSSGSQ  120
KVGVKKALVF YGGKPPRGVK TNWIMHEYRL VDNKPNNKPP AYDLCHNKKG SLRLDDWVLC  180
RIYKKNNTNR PMDHEREDSM EDMMMMGTPM SMSMSMSMPS SISNMGQHHH LHNHHPLTKV  240
TGSLNYTSLL DSHVDDQHGI YEGMMGGHAM DPPTNISHMP LKRTLPSLYW GGNDHNTGGD  300
IGCSHSPSKR LSMLQMSNEA NNNNNNNNNN NTKIAGNNNS SEESGARSDH HVNNNNNNNN  360
NNMSSMSSLL NQLPSEIPPP LHQQQQPMLG SLSDGVFRQP YPLPGLNWYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-77	11	188	1	168	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-77	11	188	1	168	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-77	11	188	1	168	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-77	11	188	1	168	NO APICAL MERISTEM PROTEIN
4dul_A	7e-77	11	188	1	168	NAC domain-containing protein 19
4dul_B	7e-77	11	188	1	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675608.1	0.0	PREDICTED: NAC transcription factor 56
Swissprot	Q9LD44	1e-109	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A0K9Q8A9	1e-146	A0A0K9Q8A9_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010675608.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	3e-99	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]