PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_086850_ncij.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | SBP | ||||||||
Protein Properties | Length: 252aa MW: 28514.2 Da PI: 10.0683 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.9 | 5.2e-42 | 126 | 202 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e+C+adl++ak+yhrrhkvCe+h+kap+vlvs+l+qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk+++ Bv4_086850_ncij.t1 126 CQAEKCTADLTDAKRYHRRHKVCEFHAKAPSVLVSNLRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKSSS 202 **************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.4E-34 | 120 | 187 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.017 | 123 | 200 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-38 | 124 | 204 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.9E-31 | 126 | 199 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDFHKPENTA TSKRMMMMMM RDKTTKTRTS HKNNTSTINF VDHDQEDKLS DDDNNNNNNN 60 NNNHMGVADQ EHELTMSRTT HDTFTTTTTT TNDEKKPKRA TAAHTGRRVA SAAGGGGGER 120 GGIISCQAEK CTADLTDAKR YHRRHKVCEF HAKAPSVLVS NLRQRFCQQC SRFHELSEFD 180 ETKRSCRRRL AGHNERRRKS SSDTQGEGGS SSNQTKGNNP QFRPPSDHER ANITQISYSG 240 NGTSTYKQFQ IR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-38 | 122 | 199 | 7 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010675500.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 4 | ||||
TrEMBL | A0A0K9QRG9 | 4e-62 | A0A0K9QRG9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010675500.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 1e-41 | squamosa promoter binding protein-like 4 |