PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_086330_roni.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HB-other
Protein Properties Length: 643aa    MW: 66720.2 Da    PI: 5.5
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_086330_roni.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.43.7e-0613542556
                        --HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
            Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                        p +e+  eLA+k            ++ +qV +WFqNrR+  +
  Bv4_086330_roni.t1 13 PAREHLVELAQKFsnsperagkiTVQMKQVWNWFQNRRYALR 54
                        666677777777777777777669999***********9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.815156IPR001356Homeobox domain
SuperFamilySSF466892.82E-71154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-41257IPR009057Homeodomain-like
CDDcd000860.009451556No hitNo description
PfamPF167192.2E-41107233IPR032001SAWADEE domain
Gene3DG3DSA:2.40.50.408.4E-4118158No hitNo description
CDDcd000240.00121120153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MEAVLRDHGG HVPAREHLVE LAQKFSNSPE RAGKITVQMK QVWNWFQNRR YALRSKLVKS  60
PNPRDMPPNP RDEVAVAPLR MVPPAPQQTL VPSGHNVVRN ASENPPMEFE AKSARDGAWY  120
DVQAFLSHRY LETGNPEVLV RFAGFGPEED EWVNVRKLVR QRSLPCESSE CVAVLPGDLI  180
LCFQEGKEQA LYFDAHVLDA QRRRHDLRGC RCRFLVRYDH DQSEEIVPLR KVCRRPETDY  240
RLQQLHAANE SASTSVSAES KKAAVDPTSS STLRVGNLNP SAASAMPAPI IMNAAAVQHP  300
TPAPAVAAAS APAPAPAPSP AAASAPVPAP APAPAPAPAP AAAVAPAPAP APAPAPAAAS  360
APAPAPAPGS ALAPTSAPGV PTAAPPLAGE LAPVSAPTLI PAPIPSQTPT STCFPPEAPI  420
TPPTPSLTPT FTPTPLATLS SAPTPPTTLS SAPIPFLSAI SAATTSASAI SAPTISASAI  480
SAPSPSAQLS APIFTPSPTP MPSPISAPAP SSAPPQALTP IPISMPGAPP ELKKIESDNP  540
RTSADEASAQ DSNNNVGATS IIMEIKKEES SNPENSLIIG NSSSQGETCN NPTVTVLEAE  600
KVGSSEPSEP TMPVSTAITD GDPTVSKMEE SSNVNVSAEH TKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-481072374134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-481072374134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-481072374134SHH1 SAWADEE
4iur_B4e-481072374134SHH1 SAWADEE
4iut_A4e-481072374134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-481072374134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-481072374134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-481072374134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-481072374134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-481072374134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675448.10.0PREDICTED: putative uncharacterized protein DDB_G0290521
STRINGXP_010675448.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-104sequence-specific DNA binding transcription factors;sequence-specific DNA binding