PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_083890_jjmx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 360aa    MW: 40363.1 Da    PI: 10.5307
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_083890_jjmx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.2e-32293351360
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+k
  Bv4_083890_jjmx.t1 293 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHSK 351
                         9************************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-16244289IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-34279350IPR003657WRKY domain
PROSITE profilePS5081130.354286352IPR003657WRKY domain
SuperFamilySSF1182901.96E-27287350IPR003657WRKY domain
SMARTSM007742.9E-39291351IPR003657WRKY domain
PfamPF031061.7E-27293349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEIELANKVA VESGHRVFSL ICQKQESQER NLIAQTGDAV CKFKRVVSLL GKKSFGHARM  60
RKLNNLPQSL PEKIFLETPH LNPETSAKPI QLLPSSGFMR NSVSEIDQTS QNSSQISQKM  120
LVEKPSVDVS LSVKPPGQNP TQQKPTQNIQ FLQQQQQFQQ QMLQRLQIQQ QMKYQADMMN  180
NSSRSGSGIN LKFDGSSTCT QTMSSNRSFV SSLSMDGSIA SLSRNSFRLI GLPQSSDPNS  240
QHLRRRCLVK GEGGSVKCGN NAKCHCSKKR KLRVKRSIKV PAISNKNADI PPDEYSWRKY  300
GQKPIKGSPH PRGYYKCSSM RGCPARKHVE RCLEDPSMLI VTYEGEHNHS KFIASHSSQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-202893491271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675100.10.0PREDICTED: probable WRKY transcription factor 74
SwissprotQ9SR071e-107WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A0K9R9P00.0A0A0K9R9P0_SPIOL; Uncharacterized protein
STRINGXP_010675100.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-107WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]