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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_077700_pxuq.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | ZF-HD | ||||||||
Protein Properties | Length: 209aa MW: 23501.4 Da PI: 7.7662 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.4 | 8.3e-29 | 20 | 71 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v YkeClkNhAa+lGgh++DGCgE+m+s ++ ++l C+ACgCHRnFHR+ev+ Bv4_077700_pxuq.t1 20 VVLYKECLKNHAAALGGHSTDGCGEYMAS----SSDDTLFCSACGCHRNFHRKEVD 71 589*************************9....5568****************986 PP | |||||||
2 | Homeobox | 16.9 | 1.1e-05 | 130 | 185 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+ft++q e++ + + k +++++e+ ++ +++g++ r+ k+W +N + Bv4_077700_pxuq.t1 130 KRYRTRFTNDQKERMLGFAQkagwKIQKLDEESVQQFCQEVGIKRRVLKIWMHNNK 185 799************98777777779****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.1E-24 | 21 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-15 | 21 | 71 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.993 | 23 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.7E-25 | 23 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 116 | 190 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.41E-19 | 119 | 188 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.9E-26 | 129 | 185 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00984 | 130 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MNESSTQAGD INSKSKGMVV VLYKECLKNH AAALGGHSTD GCGEYMASSS DDTLFCSACG 60 CHRNFHRKEV DMGGASHTNL PEYLFWCNTS IVPKNQVLEC QEKEGVIPAA TTSENEGEQT 120 KVEGNINSKK RYRTRFTNDQ KERMLGFAQK AGWKIQKLDE ESVQQFCQEV GIKRRVLKIW 180 MHNNKHLFAK KITNSSLDEL HDASDYSNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 1e-22 | 129 | 186 | 17 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010674293.1 | 1e-158 | PREDICTED: zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9M9S0 | 9e-50 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A371HZK3 | 2e-57 | A0A371HZK3_MUCPR; Zinc-finger homeodomain protein 4 (Fragment) | ||||
STRING | XP_010674293.1 | 1e-157 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 4e-52 | homeobox protein 31 |