PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_074370_ygxg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 556aa    MW: 60506.6 Da    PI: 4.7436
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_074370_ygxg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-183784148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT  Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l
  Bv4_074370_ygxg.t1 37 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 84
                        79******************************************9986 PP
2Myb_DNA-binding52.51.1e-1690133146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++
  Bv4_074370_ygxg.t1  90 KGAFTPEEENRIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 133
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1143284IPR017930Myb domain
SuperFamilySSF466891.98E-3034131IPR009057Homeodomain-like
SMARTSM007175.5E-153686IPR001005SANT/Myb domain
PfamPF002492.5E-153784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-243891IPR009057Homeodomain-like
CDDcd001674.45E-113984No hitNo description
PROSITE profilePS5129426.30385139IPR017930Myb domain
SMARTSM007172.3E-1689137IPR001005SANT/Myb domain
PfamPF002491.2E-1590133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2692137IPR009057Homeodomain-like
CDDcd001675.44E-1292133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MTSDSDKRRA AKCRKNSPSA EEVSSGGNSS GGSPLKKGPW TSAEDAILVE YVTKHGEGNW  60
NAVQKHSGLS RCGKSCRLRW ANHLRPDLKK GAFTPEEENR IIELHAKMGN KWARMAAELP  120
GRTDNEIKNY WNTRIKRLQR AGLPIYPPSV RLHAMSESQQ SEDMMTCQNG DLHGSEASES  180
SGFDIPDVEF KNLGLNQGYL NCSPALLDMP PTSLLQKGVS SSSSYGFMFS ALNPHKRLRE  240
VESQFHSSVA STSNAFSSFD QHEDDLFGRL TSVQPLWSPP SYDPDFNIDQ TSPIDVLGSH  300
APINGNSSSS EPIHEAMKLE LPSLQYSASQ VGSWATPSSP LPSLESVDTL IQSPLSEHTQ  360
SNCPSPRSSG LLEAIVYESR SLKCSNYNAH QQISEPSVMA GDGVESSSRN VCETRWDVCG  420
DPMSPLSQSA ASVFVEYTPV SGGSSSDEPQ SAENEVIPGQ FKPEAADWIS DGNKDVLCPL  480
DYLRPDALLD SFWYSHRAGL SKDQSVTGDD GALLGDDLSC EYKQASALPS DESNQSFGLG  540
SSTWDISAVY PFSKND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30351375106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673830.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_010673832.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A0K9R2L50.0A0A0K9R2L5_SPIOL; Uncharacterized protein
STRINGXP_010673830.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.15e-85myb domain protein 81