PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_073880_jqoq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 269aa    MW: 31271.2 Da    PI: 8.4482
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_073880_jqoq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.61.5e-36161072102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sw e+++sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg+k+
  Bv4_073880_jqoq.t1  16 FLTKTYQLVDDPRTDHIVSWGEDETSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFRKGEKH 97 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k+
  Bv4_073880_jqoq.t1  98 LLCEIHRRKT 107
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-397100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-5912105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.29E-3413105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVFSVSESQK SVPAPFLTKT YQLVDDPRTD HIVSWGEDET SFVVWRPPEF ARDLLPNYFK  60
HNNFSSFVRQ LNTYGFKKVV ADRWEFANEY FRKGEKHLLC EIHRRKTPQH HHQIHYQDQI  120
LLPSQYIPSP TDENSSWINI DQSSPLPSPK PSNGPANDIL TALTEDNQRL RKRNFMLLSE  180
LNHMKTLYND IIYFIQNHVK PAVPNGNNND QNRPVNFNAM AAAPPKLIEL DDQNQENRQG  240
DTSKRDTMIK LFGVPLHSKK RLHLAEGNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-221210726131Heat shock factor protein 1
5d5v_B4e-221210726131Heat shock factor protein 1
5d5v_D4e-221210726131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673780.10.0PREDICTED: heat stress transcription factor B-4-like isoform X3
RefseqXP_019104398.10.0PREDICTED: heat stress transcription factor B-4-like isoform X1
RefseqXP_019104399.10.0PREDICTED: heat stress transcription factor B-4-like isoform X2
RefseqXP_019104400.10.0PREDICTED: heat stress transcription factor B-4-like isoform X4
SwissprotQ9C6351e-89HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0K9QJR51e-138A0A0K9QJR5_SPIOL; Uncharacterized protein
STRINGXP_010673780.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-89heat shock transcription factor B4