PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_073630_adyh.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | SRS | ||||||||
Protein Properties | Length: 482aa MW: 48785.1 Da PI: 8.1588 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 209.1 | 1.1e-64 | 242 | 418 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.................aeaaskrkr 76 gt++CqdCGnqakkdC+h+RCRtCC+srgfdC+thvkstWvpaa+rrerq + as + s +++ +k++r Bv4_073630_adyh.t1 242 GGTTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPAARRRERQIMGVGASPGTHVSGgggggggggggggassgSTSGAKKPR 332 5789**********************************************988777766555554899**********9987777778888 PP DUF702 77 elkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +s+++ a++s + +s+++++++etss lP +v+++avf+cvrv++vddge+e+aYq+ v+igGhvfkG+LydqG+e Bv4_073630_adyh.t1 333 LISSQNT-ATTSHTSNSNTPPRSFETSSshqdasfkesLPGQVKAPAVFKCVRVTAVDDGEDEFAYQAMVKIGGHVFKGFLYDQGTE 418 7655544.44444446666788888888899******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.8E-61 | 244 | 418 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.3E-26 | 246 | 288 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.5E-28 | 370 | 416 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MLAVVATTRR LASDSGAFAD WVASSASNAA DKSNDLSLGF NAGPNPPTGP APSSGNTLWP 60 TASRAAALGY GIPPEMGMFV VAPASTFHHH QQQQQHESSL MMDSHSHHHH HHHFSTTRDG 120 GGVGGVNGVN NAGTALGVGV GVGVIPLLTT GPCLNMGGGG GGDNSNSNSN NNSSNNNNTL 180 DGHDGFMGRN RAGAIQLWQT HQQQMGGNHN NYPKKSINFD PISGPNLLHS SSTSTMGCGG 240 GGGTTTCQDC GNQAKKDCSH RRCRTCCRSR GFDCSTHVKS TWVPAARRRE RQIMGVGASP 300 GTHVSGGGGG GGGGGGGGGA SSGSTSGAKK PRLISSQNTA TTSHTSNSNT PPRSFETSSS 360 HQDASFKESL PGQVKAPAVF KCVRVTAVDD GEDEFAYQAM VKIGGHVFKG FLYDQGTEPR 420 DGFPNLSELH LGGGASSSAG GGGGGRNGGA SSSSPLLDPS DVYGGSGTGG LLGGSTYGNT 480 IN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010673751.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A438KG41 | 1e-130 | A0A438KG41_VITVI; protein lateral ROOT PRIMORDIUM 1 | ||||
STRING | XP_010673751.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 4e-54 | Lateral root primordium (LRP) protein-related |