PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_072620_yruo.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 397aa    MW: 43285.8 Da    PI: 5.8761
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_072620_yruo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.6e-143784148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Bv4_072620_yruo.t1 37 KGLWSPEEDDKLMNYMLTNGQGCWSDVARNAGLLRCGKSCRLRWINYL 84
                        678*****************************99************97 PP
2Myb_DNA-binding50.25.9e-1690133146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E++l+++++ +lG++ W+ Ia++++ gRt++++k++w++
  Bv4_072620_yruo.t1  90 RGAFSPQEEDLIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 133
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8383284IPR017930Myb domain
SuperFamilySSF466891.68E-2735131IPR009057Homeodomain-like
SMARTSM007179.3E-113686IPR001005SANT/Myb domain
PfamPF002493.7E-133784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-223891IPR009057Homeodomain-like
CDDcd001671.09E-84084No hitNo description
PROSITE profilePS5129425.24585139IPR017930Myb domain
SMARTSM007171.0E-1589137IPR001005SANT/Myb domain
PfamPF002494.8E-1590133IPR001005SANT/Myb domain
CDDcd001673.94E-1192135No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2592140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MRKPTDPASK GNSNGNSNSN SNGGCTSTTN GSIKLRKGLW SPEEDDKLMN YMLTNGQGCW  60
SDVARNAGLL RCGKSCRLRW INYLRPDLKR GAFSPQEEDL IIHLHSLLGN RWSQIAARLP  120
GRTDNEIKNF WNSTVKKRLK SSSNSSSSPN ASDSSLSTEP RDGMVGGFMA MQDPCSIMAM  180
YLNNNSAASP TSSSLQSMVP LHHHGIMDPL SNMVNNSTTT TTATATATAT TLDVSACGNG  240
YMNHASSCMS MSSQGHGMCN VGDDGLMICG SYGMLGGQNY NYGILQGELS IPSLETISIE  300
ENTQVSEDIV FGSNTSNNNH NFHNNNNDNH FDHNHHIIST INNNTNPFNM AKKFEIAIPG  360
VGNNWEGGEN DSRLGEWDLE ELMKDVSSFP FIDYQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26351415110B-MYB
1h8a_C2e-263413924128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673636.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A0K9RB901e-144A0A0K9RB90_SPIOL; Uncharacterized protein
STRINGXP_010673636.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-67myb domain protein 83