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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_072290_pyiq.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | AP2 | ||||||||
Protein Properties | Length: 602aa MW: 65389.3 Da PI: 6.4271 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.1 | 5.8e-10 | 207 | 263 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+ ++ a+ k++g Bv4_072290_pyiq.t1 207 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARSYDLAAIKYWG 263 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.7 | 3.8e-15 | 306 | 357 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Bv4_072290_pyiq.t1 306 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 357 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-7 | 207 | 263 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.89E-19 | 207 | 273 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-14 | 207 | 273 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-11 | 208 | 272 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.016 | 208 | 271 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-23 | 208 | 277 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-6 | 209 | 220 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-18 | 306 | 367 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.1E-10 | 306 | 357 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.62E-25 | 306 | 367 | No hit | No description |
PROSITE profile | PS51032 | 19.216 | 307 | 365 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-18 | 307 | 366 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-33 | 307 | 371 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-6 | 347 | 367 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MGSMNSNNWL SFPLSPTHPS LQSHLQTNDS QPHQQFSLGL VSDHIDNPFG QAQEWNLLNP 60 QGPNEVPKIA DFLGVGNSET HHSPDLTAFS DMSQGGESDY LFSGNGGGLM AVQNTVAAAT 120 NSSQYDQYQE NSNNCLQSLT LSMGSSGQQP QQQQQPPSST NNCETSGDNN STASVAASTA 180 ATVTTAITPV VEATPRRTLD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQSRKGR 240 QGGYDKEEKA ARSYDLAAIK YWGTSTTTNF PISNYEKEIE DMKHMTRQEF VAAIRRKSSG 300 FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST EEEAAEAYDI AAIKFRGLNA 360 VTNFDMSRYD VKAILESNTL PIGGGAAKRL KEAQAIESSR KREEMLALSN SSYPYGASSS 420 SSTRYGAHQQ ATTHAYPLLP YHHQDHQPQP LLTLQNNHGQ ESNISLSHYS QEAQFLQLYQ 480 QSSYSNPSSM YNNYLQTNPS LLHGFMNMGS NSCGVIDTNN TNGSSSGSYS GGGYLGGGAG 540 INAMGAASTT SNAVVSGEPE PLALVKVDYD MPSAGGGGGS YEGWSTETVQ GPNNGVFTMW 600 ND |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010673600.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A061GZ62 | 0.0 | A0A061GZ62_THECC; AP2 domain-containing transcription factor | ||||
STRING | XP_010673600.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |