PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_071090_wzrs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family EIL
Protein Properties Length: 473aa    MW: 53002.1 Da    PI: 6.729
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_071090_wzrs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3364.42e-111143112289
                         XXXXXXXXXXXXXXXXXXXXXX..XXXXX......XXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa.....tgakksn..........ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgii 77 
                         elk+rmwkd+m++k+l   k+ + +  e+                        ++e++rrkkm r+QD+iLkYM+k mevc+aqGfvYgii
  Bv4_071090_wzrs.t1  14 ELKRRMWKDKMRMKKLIATKNASKAVTETYklagtS-----TvdnltvaataSREEKSRRKKMLRSQDAILKYMVKVMEVCKAQGFVYGII 99 
                         9**************988888766656655443330.....24456777777*************************************** PP

                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT CS
                EIN3  78 pekgkpvegasdsLraWWkekvefdrngpaaisky.qaknlilsgessl.qtersseshslselqDTtlgSLLsalmqhcdppqrrfplek 166
                         pekgkpv+g+sdsLr+WW+  v+f++ +p a+     +  +il+ +      ++ s+ h+l+elqDTtlgSLLsalmqhc ppqrrfple+
  Bv4_071090_wzrs.t1 100 PEKGKPVTGSSDSLREWWRGSVKFEQSAPQALQHLiVP--AILGCAGAVnGENSASTLHMLQELQDTTLGSLLSALMQHCIPPQRRFPLER 188
                         *******************************9998544..44444444413457899********************************** PP

                         --HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT- CS
                EIN3 167 gvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeeke 256
                         g+ pPWWPtG+e wwg++g l+ ++g+ppykkphdlkkawkvsvL avikhmsp+++++ +l+ +sk+lq km+ak+++++++v+ qee++
  Bv4_071090_wzrs.t1 189 GLHPPWWPTGDEVWWGQQGvLAVEHGPPPYKKPHDLKKAWKVSVLCAVIKHMSPDLNRMMRLVKKSKCLQAKMTAKDTATWSKVVDQEEAL 279
                         *******************9999999****************************************************************9 PP

                         S--XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX CS
                EIN3 257 catvsahssslrkqspkvtlsceqkedve.gkke 289
                         ++  +  +   ++q+ ++ +++++    +  +++
  Bv4_071090_wzrs.t1 280 LRLTHLGKTG-KDQDSDTEHQQNKR-KADaFDQD 311
                         9865555432.23333333333322.22222322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.6E-11114277No hitNo description
Gene3DG3DSA:1.10.3180.101.1E-66150282IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.83E-57155280IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSEESDAEDI SYAELKRRMW KDKMRMKKLI ATKNASKAVT ETYKLAGTST VDNLTVAATA  60
SREEKSRRKK MLRSQDAILK YMVKVMEVCK AQGFVYGIIP EKGKPVTGSS DSLREWWRGS  120
VKFEQSAPQA LQHLIVPAIL GCAGAVNGEN SASTLHMLQE LQDTTLGSLL SALMQHCIPP  180
QRRFPLERGL HPPWWPTGDE VWWGQQGVLA VEHGPPPYKK PHDLKKAWKV SVLCAVIKHM  240
SPDLNRMMRL VKKSKCLQAK MTAKDTATWS KVVDQEEALL RLTHLGKTGK DQDSDTEHQQ  300
NKRKADAFDQ DVETEMALQY TCGNLEGLQN EAGLGLIEKH TRSKHGPECN SVAQSSSLEA  360
IYAQLAAEYH DYLDLQHRTA SLPVNLHLAD SSVMPSDETY RHCHPQPQVY SVVGDQTQYW  420
ETAVADLGLD VAYQVHRGNV DHNHCPLEEG LNQQVAVAAT SIWDLPYQEP DDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-581532811128Protein ETHYLENE INSENSITIVE 3
4zds_B2e-581532811128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673484.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-120EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A0K9RT271e-160A0A0K9RT27_SPIOL; Uncharacterized protein
STRINGXP_010673484.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-115EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]