PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_071040_cjuq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 306aa    MW: 34598.8 Da    PI: 8.3639
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_071040_cjuq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.6e-153385148
                        TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEdell  ++  + +       W+t++++ g+ R++k+c++rw +yl
  Bv4_071040_cjuq.t1 33 KGPWTAEEDELLRSYILTHQNQngkvgGWRTVPQRAGLLRCGKSCRLRWMNYL 85
                        79***********************************99************97 PP
2Myb_DNA-binding49.97.4e-1691136148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg ++ +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Bv4_071040_cjuq.t1  91 RGLFSSDEEDLILRLHRLLGNR-WALIAGRIP-GRTDNEIKNYWNTHL 136
                         7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.2882885IPR017930Myb domain
SuperFamilySSF466892.6E-2530132IPR009057Homeodomain-like
SMARTSM007171.9E-93287IPR001005SANT/Myb domain
PfamPF002497.4E-133385IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-193492IPR009057Homeodomain-like
CDDcd001671.87E-73585No hitNo description
PROSITE profilePS5129425.13186140IPR017930Myb domain
SMARTSM007171.2E-1490138IPR001005SANT/Myb domain
PfamPF002491.1E-1491136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2493140IPR009057Homeodomain-like
CDDcd001675.12E-1294136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRKPSPPSPS STTRRLQAGC SSSSSKVGIK MKKGPWTAEE DELLRSYILT HQNQNGKVGG  60
WRTVPQRAGL LRCGKSCRLR WMNYLRPNLR RGLFSSDEED LILRLHRLLG NRWALIAGRI  120
PGRTDNEIKN YWNTHLSKKL LSLGIDPLTH KPLNPPPING ATIATTARKN IHHEFVTAAT  180
AHANPNHWND TNNIPLPPNH ITAAATTDLL ATSSTAIRPI PHQNDLPYHD NDYMTNYVYK  240
HNKDDNYDHN IDDVDHGVFS SFLDSLINYD DMSSEPTFHH NDHEHEDPLH QCIQSPLNTP  300
PLTPHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-20331407108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104346.10.0PREDICTED: transcription repressor MYB6 isoform X2
TrEMBLA0A2I4DQK75e-72A0A2I4DQK7_JUGRE; transcription repressor MYB5-like
STRINGXP_010673475.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-63myb domain protein 5