PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv3_067720_fihx.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | C2H2 | ||||||||
Protein Properties | Length: 247aa MW: 27624.7 Da PI: 9.4692 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00074 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ Fs++ L H++ H Bv3_067720_fihx.t1 61 FTCNYCKGEFSTSQALGGHQNAH 83 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.05E-5 | 58 | 88 | No hit | No description |
Pfam | PF13912 | 2.2E-5 | 60 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.762 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MESPSSSKNP INNKRDDHNN VKKMKGAMVS SNSANNTTLD LKLSSFSQEI RPIESNSTRV 60 FTCNYCKGEF STSQALGGHQ NAHKQERARD KMRQATKFPP YNANNNLYYP YNFGTYSNIA 120 SYGGYCKRSP LGVIKTNSMI QKPAYRWPIM NNHGYRYGYG AINQAKPSFI VNSQSSNDDI 180 VNYSSINNLN NLSKSLPTLG EGDFKGNYRI VESGTGNIEK EDDDHISGGK LDQMKPENSC 240 LDLSLRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010693745.1 | 0.0 | PREDICTED: zinc finger protein 3 | ||||
TrEMBL | A0A0J8BFU4 | 0.0 | A0A0J8BFU4_BETVU; Uncharacterized protein | ||||
STRING | XP_010693745.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 1e-13 | zinc-finger protein 1 |