PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_067630_hoai.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 154aa    MW: 17264.8 Da    PI: 5.923
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_067630_hoai.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-052648123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C+ C+k Fs+   L  H++ H
  Bv3_067630_hoai.t1 26 YICNFCNKGFSNAQALGGHMNIH 48
                        89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.8E-62450IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.68E-72452No hitNo description
SMARTSM003550.0042648IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6142653IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MQQTSTPDPV DEEHVSYSDD YYVRSYICNF CNKGFSNAQA LGGHMNIHRK DRAKLRQSPS  60
SHNDLRSLNS KHENSGYPCA STEPEVCTYR PNSDLLLSTR SEFNDVSGER EALPLFVDSP  120
SMSKQDSSDH FKVNKDDSGV DLELRLGSGA RSQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693689.21e-112PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A0J8BFT31e-110A0A0J8BFT3_BETVU; Uncharacterized protein
STRINGXP_010693689.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-18C2H2 family protein