PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_066350_xfje.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 325aa    MW: 36062.1 Da    PI: 4.5838
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_066350_xfje.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.63.5e-37261182103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+++ed++++++isw+++g+sf+v++++ fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+
  Bv3_066350_xfje.t1  26 FLTKTYQLVEDPSIDDVISWNDDGSSFIVWNPTVFARDLLPRYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDAFRRGEKQ 107
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Bv3_066350_xfje.t1 108 LLCEIQRRKTT 118
                         ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3823115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.99E-3623115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.0E-3326115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGDQIASENV ACGSGGEAQR SIPTPFLTKT YQLVEDPSID DVISWNDDGS SFIVWNPTVF  60
ARDLLPRYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFSNDA FRRGEKQLLC EIQRRKTTAV  120
VTVAQQKQIS GGDSGEEQVI SNSNSPPLGI PTSVYTNNIN NHNYSNNNNK GDLIDENERL  180
KRENLELNRE LTSMKALCNN IFSLMTNFAT SEGNTTATSS STNCMKQALD LLPPNLISAG  240
EGQGSGSESP KIFGVPIGIG IGIGMKRVRE EEGVVQVQVQ DDMMETDIEI KCEPSDVGGI  300
IDEGDNQNTT PWLQQCHRQN QRVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-26911713131Heat shock factor protein 1
5d5v_B1e-26911713131Heat shock factor protein 1
5d5v_D1e-26911713131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693477.10.0PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW45e-90HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0K9RC681e-149A0A0K9RC68_SPIOL; Uncharacterized protein
STRINGXP_010693477.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-73heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]