PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_065440_fztq.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

HSF

Protein Properties

Length: 475aa MW: 52680.5 Da PI: 5.8727

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_065440_fztq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.4	2.6e-34	18	108	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl k+y++++d++++e++sws++ +sf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k+kk+ Bv3_065440_fztq.t1 18 FLLKTYDMIDDSSTDEIVSWSHSHDSFIVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFIKDKKH 99 9*******************99*************************************999.........********** PP XXXXXXXXX CS HSF_DNA-bind 93 llekikrkk 101 ll++i+r+k Bv3_065440_fztq.t1 100 LLKNIHRRK 108 *****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.18E-34	14	107	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	9.8E-37	14	107	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	9.1E-58	14	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.0E-19	18	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.0E-30	18	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.0E-19	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	57	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.0E-19	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MEIAPSTSTS GGGGPAPFLL KTYDMIDDSS TDEIVSWSHS HDSFIVWNPP EFARLLLPTY 60 FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EEFIKDKKHL LKNIHRRKPI HSHSQPPPDP 120 ERATFEEEIE KLSREKNELD AKVSGFKMHH CAAKSQIEDI TQRICGMEQR QEKLLTHLQK 180 AVQNPAFVEH LAQKIEAMDL TAYNKKRRLP RSDLFLPAVE NNFGDIYQQD LSNKLKLELS 240 TAVSNINLVS NSTHSSNEDW SSPTQRSSGT DPKDAELGIC TLPFATETVE LSDAGTCLAF 300 KTDASLSDKV GVKECSGLQS LQSNLVSTEE CEGQICCQLN LSLASSLVQP NQNSYSSRAT 360 HMDVDISGPQ GTRPVTNGSN SDGLGVALKN NNSVNNVGNL SSSQETRSNN RAPAPAAPAR 420 VNDHFWEQFL TERPGTSDTE EASSCYRALP GDEQEDRGSS HGLSRTAKNL GKLTL

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MEIAPSTSTS GGGGPAPFLL KTYDMIDDSS TDEIVSWSHS HDSFIVWNPP EFARLLLPTY  60
FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EEFIKDKKHL LKNIHRRKPI HSHSQPPPDP  120
ERATFEEEIE KLSREKNELD AKVSGFKMHH CAAKSQIEDI TQRICGMEQR QEKLLTHLQK  180
AVQNPAFVEH LAQKIEAMDL TAYNKKRRLP RSDLFLPAVE NNFGDIYQQD LSNKLKLELS  240
TAVSNINLVS NSTHSSNEDW SSPTQRSSGT DPKDAELGIC TLPFATETVE LSDAGTCLAF  300
KTDASLSDKV GVKECSGLQS LQSNLVSTEE CEGQICCQLN LSLASSLVQP NQNSYSSRAT  360
HMDVDISGPQ GTRPVTNGSN SDGLGVALKN NNSVNNVGNL SSSQETRSNN RAPAPAAPAR  420
VNDHFWEQFL TERPGTSDTE EASSCYRALP GDEQEDRGSS HGLSRTAKNL GKLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-20	11	107	19	129	Heat shock factor protein 1
5d5v_B	2e-20	11	107	19	129	Heat shock factor protein 1
5d5v_D	2e-20	11	107	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673379.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-143	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A0J8CRZ7	0.0	A0A0J8CRZ7_BETVU; Uncharacterized protein
STRING	XP_010673379.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-142	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]