PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_065070_ixyi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 520aa    MW: 56959.2 Da    PI: 5.1689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_065070_ixyi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09326373455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++sLq
  Bv3_065070_ixyi.t1 326 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKATVLDEIINYVQSLQ 373
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.22E-10320377No hitNo description
SuperFamilySSF474592.09E-17320392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-18322391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6326373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MEKELKYGLM EISSDQFSNC YFHPNWDNSI DQNDPFESAL SSIVSSPTTT TTTAIASNGG  60
GDGMMIRELI GRLGSICDSD EVSPQSCINS TNNSCYNTPL NSPPSKFNLS SLMMLGNNSG  120
NYPIQQNLGS FNADPGFVER AAKFSSFGNN NTNNNNGSNF SEFGGVNCSI NTTTNNNNIR  180
SISNLESGKL SRVNSDKKLG EIGELGDSRE GSSVSEQNPG VEIGVKPQND ANSRKRKSVS  240
KPKVKETPSS FLPKDEKVEV ENEELNAKRS KLDEKEASKK ENAGESNNNK EKQSNSNNNT  300
TKEASKAEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKFLQDLVP GCNKVTGKAT  360
VLDEIINYVQ SLQRQVEFLS MKLATVNPRM EFNMEALLSK EMFQSRGSSL PQTMYPIDQN  420
SAQALPYGYQ SSQQMSLTLP NGVPNGIENP FSANSLNGAG MRRNPSIPLP SIDGFVDSMT  480
QLPTLWEDDL QSIVQMGITQ NQPLNVPGGT LPNGQMKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673318.10.0PREDICTED: transcription factor bHLH78
TrEMBLA0A0K9QN730.0A0A0K9QN73_SPIOL; Uncharacterized protein
STRINGXP_010673318.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-63bHLH family protein