 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bv3_064050_dwac.t3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
| Family |
C2H2 |
| Protein Properties |
Length: 228aa MW: 26434 Da PI: 8.6856 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bv3_064050_dwac.t3 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 19.3 | 3.1e-06 | 21 | 45 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++C+ Cgk F+ s+L++H +H
Bv3_064050_dwac.t3 21 HVCQeeGCGKEFKYASQLRKHAESH 45
789999***************9988 PP
|
| 2 | zf-C2H2 | 16.3 | 2.8e-05 | 110 | 134 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23
kC+ C+ sF++ksn+++H + H
Bv3_064050_dwac.t3 110 KCSfeGCNHSFTTKSNMQQHVKAvH 134
79999***************99877 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:3.30.160.60 | 3.5E-7 | 16 | 45 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.004 | 21 | 45 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.658 | 21 | 50 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 23 | 45 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 2.6 | 52 | 77 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 54 | 77 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 27 | 80 | 101 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 4.59E-8 | 92 | 147 | No hit | No description |
| SMART | SM00355 | 2.0E-4 | 109 | 134 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.697 | 109 | 139 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 5.2E-8 | 110 | 134 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE pattern | PS00028 | 0 | 111 | 134 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 7.3E-5 | 135 | 163 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 5.2 | 140 | 166 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 142 | 166 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MKEFHEHKPA VPDNGKEQSK HVCQEEGCGK EFKYASQLRK HAESHVLQSS ETFCGDPGCM 60
KPFASVECLR AHMRSCHQYV NCEVCGSKHL RKNYKRHLQT HDEHLPTTLK CSFEGCNHSF 120
TTKSNMQQHV KAVHLKLKPF ICSIPGCGMR FAFKHVRDNH EKTSRHVYVH GDLEEFDEQF 180
RSRPRGGQKR KLPDIEMLMR KRISAPNHSD SAQNRSSEFL MWLLSDDT
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
