PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_061350_fahh.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NF-YA

Protein Properties

Length: 186aa MW: 21122.6 Da PI: 7.9498

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_061350_fahh.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	51.6	3.1e-16	128	163	2	38
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38 ep+YVNaKQy++Il+RRq+Rak+e e+++ +k+rk Bv3_061350_fahh.t2 128 EPIYVNAKQYHGILRRRQSRAKAELENRV-AKARKAC 163 8****************************.9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.5E-8	125	181	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	17.215	126	161	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.5E-13	128	162	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	131	151	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MNQKAEQYFS SKSSSTSHSH SQVICWSDNF LNDPPSSSSY LSMECSSNLN YSFHEDSNNP 60 IVSLGKYGEQ PKQELQLGIF PMDHPQMIHE YHMPGSNQAG LSHHNTGYYE GMHSSGGVPL 120 PGEAANYEPI YVNAKQYHGI LRRRQSRAKA ELENRVAKAR KACILIRRKC EYNCSHIFMN 180 LGIYMQ

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672781.1	1e-138	PREDICTED: nuclear transcription factor Y subunit A-9 isoform X2
Swissprot	Q945M9	2e-13	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
STRING	XP_010672780.1	1e-116	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	3e-15	nuclear factor Y, subunit A9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]