PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv3_061260_uzyk.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | ERF | ||||||||
Protein Properties | Length: 289aa MW: 33071.2 Da PI: 6.5236 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8e-20 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a+++l+g Bv3_061260_uzyk.t1 32 TYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAALAYDEAARRLYG 81 69****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.86E-32 | 31 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 32 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-34 | 32 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-13 | 32 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.445 | 32 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-21 | 32 | 90 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.7E-10 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MENLQKSSTL SSKPWKKGPA RGKGGPQNAT CTYRGVRQRT WGKWVAEIRE PKKRTRLWLG 60 SFATAEEAAL AYDEAARRLY GPEAYLNLPH LRCTYNPLNK SQRFRWFPSK NFISMFPASS 120 GCTSTTTTTT TTSSLLNVNV QPSVHVIHQK LQEFKNFGSS LNDHHSKNNK AEPKNTVMKS 180 RDKSVVIVEE DDQSLKKPQI DLHEFLEQMG VLKEGESDPN NKLDIDIMCN NKGDDELIKE 240 KIIGEMNSEW DELVEMLREE DYQPVESTSF GDFSMEQEII TFPPTIWDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-19 | 33 | 89 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010672841.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2F | ||||
Swissprot | Q9SVX5 | 5e-78 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A0K9RUZ4 | 1e-127 | A0A0K9RUZ4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010672841.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 1e-68 | ERF family protein |
Publications ? help Back to Top | |||
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