PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_061160_amou.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 382aa    MW: 43552.3 Da    PI: 7.3145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_061160_amou.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05216235120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Bv3_061160_amou.t1 216 FSCPVCYKTFNRYNNMQMHM 235
                         89*****************9 PP
2zf-C2H214.40.00011300322123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk F  + + ++H +++
  Bv3_061160_amou.t1 300 FMCRKCGKAFAVRGDWRTHEKNC 322
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.32E-5211238No hitNo description
PROSITE profilePS501579.743216243IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-6216235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45216238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
SMARTSM00355310262295IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.94E-6282320No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5296320IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549300320IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808300320IPR007087Zinc finger, C2H2
SMARTSM00355150326349IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MNDPYSNFYI RWSKFNSFHQ FSPPLPPSSS SSTTPHSSSS SYHFYNNYFN TNITNNSNNS  60
TTIIPTPPSS PPLREALPLL SLCPSTMDII HENNPNQNNN NNNNNNIRPK LGRRSSSLEE  120
EDDEDEEETV TVALHIGLPN PSAADLASIL SPPSNSQIRE NNIAKNSNNN HVIKDNEKDD  180
EEEETEDFGH PLMSRLNKGQ YWIPTPTQIL IGPTQFSCPV CYKTFNRYNN MQMHMWGHGS  240
QYRKGPESLR GTQPTGMLRL PCYCCAPGCK NNIDHPRAKP LKDFRTLQTH YKRKHGIKPF  300
MCRKCGKAFA VRGDWRTHEK NCGKLWYCIC GSDFKHKRSL KDHIKAFGHG HAAYGVDGFE  360
EEDEPASEIE HDPEDHHSRK LH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672755.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-147ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLF6HL471e-163F6HL47_VITVI; Uncharacterized protein
STRINGXP_010672755.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-137C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]