PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_056380_ameu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 450aa    MW: 49952.4 Da    PI: 6.7883
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_056380_ameu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09239282654
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++ E++RR++  +++  L+ l+P++     +K + a+i   A+ +I++L
  Bv3_056380_ameu.t1 239 SASEKQRRQNFTDKYTDLKNLIPNQ-----TKTDRASIILDAITHIHEL 282
                         688*********************9.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.186233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-11235295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-10237287No hitNo description
SMARTSM003538.3E-11239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6239282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-9239291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MYDQTQIEAA PTANDTLTRN DPAIIKNNHS QECNSSIEFQ NPNYGNPPFS THFPLLPNCS  60
STSTTQSGDS KTWVPTNMNQ HLDHNNNHEM GFTHFDENLQ PTTDFLTLLN IPRFSFQPTQ  120
QSLSPLSFLG EISPAMMMDY PSGCGSSNTF SHDPTNTPYE SNSFRLNLPF QPSLLHPHGY  180
GYDNTPGRGN GGNDHVGNGN SSALFGALED GNHHYFHGNN GVFEFCKGDD KVSKSPKSSA  240
SEKQRRQNFT DKYTDLKNLI PNQTKTDRAS IILDAITHIH ELRRTVKELK LLVEKKRIFK  300
NRMKRHKSTT EDTHSGGSNC NDGAAVVKPD PDGDFDGLAP NQLRSSWIQR KCKDTQVDVR  360
IVDDDVTIKL VQRKKINCLL SVSRNLDELQ LDLRHVAGGC VGDYYSYLFN SKICDGSSVY  420
ASAIANKLIE VVEKGYAAAS VGVVAPTNSF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672071.10.0PREDICTED: transcription factor bHLH91
TrEMBLA0A0K9R3E51e-133A0A0K9R3E5_SPIOL; Uncharacterized protein
STRINGXP_010672071.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.12e-52bHLH family protein