PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv3_056020_uozo.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | NAC | ||||||||
Protein Properties | Length: 401aa MW: 46444 Da PI: 6.4756 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.5 | 1.8e-55 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPt+eelv++yL++kv+++++++ ++ikevd+yk+ePwdL++ + +++++ewyfFs++dkky+tg+r+nrat++g+Wkatg+ Bv3_056020_uozo.t1 7 VPPGFRFHPTEEELVDYYLRRKVNSRRIDV-DIIKEVDLYKIEPWDLQElckTGDEDQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGR 96 69****************************.99**************963322233556******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk++++ k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Bv3_056020_uozo.t1 97 DKAIYC-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 ******.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-60 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.792 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MNTSAQVPPG FRFHPTEEEL VDYYLRRKVN SRRIDVDIIK EVDLYKIEPW DLQELCKTGD 60 EDQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YCKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GAPQEEGWAV CRVFKKRSPT TMRRMSEHES PCWYDDQISL 180 MSELDSPQQP SQSNNTINYS SYICKKELNH HHHHNHHNHN HNHNHNHNHN HLPFQIPQEH 240 LIHLPLFENS KMLLAPPQVT GNYNNANLIP YGLDMSLHSN SATMQQMDNV NHTNATVMMN 300 SNNNDQDVLD QLTDWRVLDK FVASQLSHED VAKENNNNND EHNNNNNNNN NEHNNNNYSS 360 SGIASELFPS APGSDHTNKE AEPLPDKAST PTSTSPIDVW K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-49 | 3 | 158 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-49 | 3 | 158 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-49 | 3 | 158 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-49 | 3 | 158 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
3ulx_A | 4e-49 | 7 | 157 | 15 | 169 | Stress-induced transcription factor NAC1 |
4dul_A | 3e-49 | 3 | 158 | 13 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-49 | 3 | 158 | 13 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010672023.1 | 0.0 | PREDICTED: NAC domain-containing protein 7 | ||||
Swissprot | Q9FWX2 | 1e-130 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A0J8CQ75 | 0.0 | A0A0J8CQ75_BETVU; Uncharacterized protein | ||||
STRING | XP_010672023.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-114 | NAC 007 |
Publications ? help Back to Top | |||
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