PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Bv3_054430_ykdf.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

WRKY

Protein Properties

Length: 433aa MW: 47412.2 Da PI: 6.8418

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_054430_ykdf.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.8	4.6e-33	224	282	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+ C vkk+vers++dp++v++tYeg+H+h+ Bv3_054430_ykdf.t1 224 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVACGVKKRVERSSDDPTIVVTTYEGQHTHP 282 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.1E-34	209	284	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-29	216	284	IPR003657	WRKY domain
PROSITE profile	PS50811	32.156	219	284	IPR003657	WRKY domain
SMART	SM00774	5.5E-39	224	283	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	225	282	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MLDTTTSTTL INNNNNNNTI FSDQIMFGYN NNNLFDVAAQ PSCEMLMMGS SGSGGFDKNN 60 NNNNNSYMGF IDMLGIQDYY GGSSNSLFDL LPPPNTPYIS ASSSSVSTTI SQRMTQQNVH 120 TQTVLDPSPS NCSTIPGESS EVVNTPATPN SLSISSSSSD AVNDEQQHTQ QQKTQQSKTV 180 EVVNDDVNDD EDKTKKQLKP KKKNQKRQKE PRFAFMTKSE VDHLDDGYRW RKYGQKAVKN 240 SPYPRSYYRC TTVACGVKKR VERSSDDPTI VVTTYEGQHT HPCPVLTRGG IGIGIGMGMG 300 IGMMSNPSLL NQCSTAPTTP SALGGSGPAS SQTFLIQHPQ HYQFNNIYPH HHQQQQQQFP 360 SYFLNPSSQT SLSFSPSGGG GANGGGQQPN TIALQRNMSR PPCSSSMNQV RDDGLLQDIV 420 PSQMRNDQPT KEE

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MLDTTTSTTL INNNNNNNTI FSDQIMFGYN NNNLFDVAAQ PSCEMLMMGS SGSGGFDKNN  60
NNNNNSYMGF IDMLGIQDYY GGSSNSLFDL LPPPNTPYIS ASSSSVSTTI SQRMTQQNVH  120
TQTVLDPSPS NCSTIPGESS EVVNTPATPN SLSISSSSSD AVNDEQQHTQ QQKTQQSKTV  180
EVVNDDVNDD EDKTKKQLKP KKKNQKRQKE PRFAFMTKSE VDHLDDGYRW RKYGQKAVKN  240
SPYPRSYYRC TTVACGVKKR VERSSDDPTI VVTTYEGQHT HPCPVLTRGG IGIGIGMGMG  300
IGMMSNPSLL NQCSTAPTTP SALGGSGPAS SQTFLIQHPQ HYQFNNIYPH HHQQQQQQFP  360
SYFLNPSSQT SLSFSPSGGG GANGGGQQPN TIALQRNMSR PPCSSSMNQV RDDGLLQDIV  420
PSQMRNDQPT KEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	217	284	10	77	Probable WRKY transcription factor 4
2lex_A	2e-27	217	284	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010671761.1	0.0	PREDICTED: probable WRKY transcription factor 23
TrEMBL	A0A0K9QEI8	1e-123	A0A0K9QEI8_SPIOL; Uncharacterized protein
STRING	XP_010671761.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	8e-44	WRKY DNA-binding protein 48