PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_054330_ziyo.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HB-PHD
Protein Properties Length: 715aa    MW: 81480.6 Da    PI: 8.4982
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_054330_ziyo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.91.3e-11495544453
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
            Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                           +++ + ++ L e+F++n  ps++ +++++++lgL+ ++V  WF+N R+
  Bv3_054330_ziyo.t1 495 LSRMSIDAVQKLREAFAENELPSRDIKRKISEQLGLEYEKVNKWFKNARY 544
                         566788899****************************************7 PP
2PHD32.71.7e-11231286151
                         SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +Ck C++    e+++++lCdg C+ +fH+kC++++l ++++p +   wlC+ C++k
  Bv3_054330_ziyo.t1 231 FCKKCKSqeVSEDNDILLCDGsCNCAFHQKCIDPPLATKDIPPEdeGWLCKYCDCK 286
                         69****987678********55*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.95E-12222288IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.6E-11227286IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.567229286IPR019787Zinc finger, PHD-finger
CDDcd155043.10E-29231283No hitNo description
SMARTSM002494.2E-8231284IPR001965Zinc finger, PHD-type
PfamPF006281.1E-8231286IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590232283IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466897.27E-10483548IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-11488543IPR009057Homeodomain-like
PROSITE profilePS5007113.135489549IPR001356Homeobox domain
SMARTSM003891.1E-10491553IPR001356Homeobox domain
CDDcd000862.25E-9492553No hitNo description
PfamPF000464.8E-9494544IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MYGGAGEFCL LEFDVYPKSI KTKVKMKTLA QMRNGVLKKL NKKRQLEFSS LVMSPGSRLI  60
KQRDQKIKGE STREKLVHKE HLQKGHLIDS SKKHNHEEFR GDRSSCSSST GKKDGGVSET  120
VSLKRRRNQK KKKDKVVPDK AAQLQRRARY LMVKMKLEQN LIDAYSGEGW KGQSREKIKP  180
QNELQRAKDQ IVKCKLGIRD TIHQLDLLGS VGKIDDSLIE PDGSIHHEHI FCKKCKSQEV  240
SEDNDILLCD GSCNCAFHQK CIDPPLATKD IPPEDEGWLC KYCDCKMEIL EAMNAHLGTQ  300
FSADSPWQDI FEEVLSNVGT GDINPEEEWP GDESDDNDYD PDRDQNDSSN RCNMEDSDPL  360
EETSTSSSCC SLESEVLSES GFSGGRHVVS SNIASVIQNC VIETNDNEIN SCPRRRCAVD  420
YIKLYDEMFG KDTNASDIYS EDEDWDPSKR RRKEKESDVA STVLTLCGSE VKHSDPQTLE  480
MCNNHLPHAK ARKPLSRMSI DAVQKLREAF AENELPSRDI KRKISEQLGL EYEKVNKWFK  540
NARYMALKKK KRESSSDFSL EKADSAAVKT AEVIVSKCSS TPASIHKKQR RKRVSWKTNL  600
TTFISPLKEQ KLKIVSLGKS KATVDLSDDM SLKKHLLYLK AKGRQKKRVK HNIEQLQEQK  660
AEQQMERLWC IEAKLWKLKQ ILSTIKKSAN DELDDLSLNK QKVVYVPVAE LKEKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449454RRRKEK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671751.10.0PREDICTED: pathogenesis-related homeodomain protein
SwissprotP487851e-128PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0K9S1620.0A0A0K9S162_SPIOL; Uncharacterized protein
STRINGXP_010671751.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-124pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]