PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Bv3_053610_mmkx.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

GRAS

Protein Properties

Length: 773aa MW: 85235.7 Da PI: 5.5748

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_053610_mmkx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	346.6	4e-106	395	773	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++l++e+A+a+++g++e a++lLarl +++++g++ qRla y+ +AL++r + ++e+++ p+ e s+e+++a+ ++++sP++k Bv3_053610_mmkx.t1 395 KQLVFEAATAIADGKNEPATELLARLARISNSKGNSEQRLAYYMGNALRSRASP-SNEIVAPAPVLELY---SDEQMQAMYSLHDISPCFK 481 6899**********************************************99.66677666666666...999999********* PP GRAS 93 fshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.......egppslRiTgvgspesgskeeleetgerLakfAeel 172 f+ l+aN +lea+ ++ +rvH+iDfd+++G+Q+++Ll+aLa+R+ g+ +l++T+v+ e +++ + ++++ L k+Ae++ Bv3_053610_mmkx.t1 482 FGLLAANLVMLEAITSAlqegSRVHVIDFDVGHGAQYINLLRALAERRsqmgtagVGSYELKVTVVET-EVTNRGVMDSVKDGLMKLAERV 571 ***88888877766667********************99966665555589****9.66799************* PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 gv+++f+ +++++++l+ e+L +++gEa++Vn++++lhr++desvs+e+ rde+L+ vk+l+P+ v++veqe++ n+++Fl+r+ e++ y Bv3_053610_mmkx.t1 572 GVNLKFES-LTRKITELTHESLGCEEGEAIVVNFAFKLHRVPDESVSMENLRDELLRRVKGLNPRAVTLVEQEMNGNTAPFLTRVNESCGY 661 ****.5999************************************************************************** PP GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrve 352 y al+dslea+lpr++++r+ vE+ lgr+ n +aceg++r+er e ++kWr+r+++aGF+ pls+++a+++++ l+ + g++v+ Bv3_053610_mmkx.t1 662 YGALLDSLEATLPRDNSDRVRVEEG-LGRKMGNSIACEGRDRVERAEVFGKWRARMGMAGFELKPLSQTVAESMRTKLNSARggNPGFTVK 751 *********************.************************************************998877899 PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 eesg + +gW++r+L+++SaWr Bv3_053610_mmkx.t1 752 EESGGVGFGWMGRTLTVASAWR 773 *******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	48.885	368	751	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-103	395	773	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MTSGFSGDYF YGGGASTGTG RTTSLTGIGS FRQQQQQQQQ PPQTLSLQQQ AMFPSMDQIA 60 QRRTDLLLGK RSFGDFQAYQ QQLLLQQHQQ QQQQQQQQNT FLFLQKQQQQ QQQQSHQQQL 120 SFLQQQYLMR SVKQRTNAFT SSPISPLSPT IDLCSPTTNT NSLSSSSSAR LGVPIPIYQQ 180 LRQQQQQQQT ISVVNKNNNN IQHNQFNPTN NCLISNLSST NNNLINNPIQ NPNPGYSYLR 240 YSNVVQTKPE TEPDNFSGVG YSNNLVSEPM EPKLEPDSED HKILDTLHEL EKQLLNDDDD 300 NEEDNDAVSV ITNSEWSETF QNLMSPGGNS NTNHASSSTS GSTNTNTNTI TSNNNNNNNS 360 MISPSPTSST SSCCSTSAPA PAPQVPPPPE TLSAKQLVFE AATAIADGKN EPATELLARL 420 ARISNSKGNS EQRLAYYMGN ALRSRASPSN EIVAPAPVLE LYSDEQMQAM YSLHDISPCF 480 KFGLLAANLV MLEAITSALQ EGSRVHVIDF DVGHGAQYIN LLRALAERRS QMGTAGVGSY 540 ELKVTVVETE VTNRGVMDSV KDGLMKLAER VGVNLKFESL TRKITELTHE SLGCEEGEAI 600 VVNFAFKLHR VPDESVSMEN LRDELLRRVK GLNPRAVTLV EQEMNGNTAP FLTRVNESCG 660 YYGALLDSLE ATLPRDNSDR VRVEEGLGRK MGNSIACEGR DRVERAEVFG KWRARMGMAG 720 FELKPLSQTV AESMRTKLNS ARGGNPGFTV KEESGGVGFG WMGRTLTVAS AWR

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MTSGFSGDYF YGGGASTGTG RTTSLTGIGS FRQQQQQQQQ PPQTLSLQQQ AMFPSMDQIA  60
QRRTDLLLGK RSFGDFQAYQ QQLLLQQHQQ QQQQQQQQNT FLFLQKQQQQ QQQQSHQQQL  120
SFLQQQYLMR SVKQRTNAFT SSPISPLSPT IDLCSPTTNT NSLSSSSSAR LGVPIPIYQQ  180
LRQQQQQQQT ISVVNKNNNN IQHNQFNPTN NCLISNLSST NNNLINNPIQ NPNPGYSYLR  240
YSNVVQTKPE TEPDNFSGVG YSNNLVSEPM EPKLEPDSED HKILDTLHEL EKQLLNDDDD  300
NEEDNDAVSV ITNSEWSETF QNLMSPGGNS NTNHASSSTS GSTNTNTNTI TSNNNNNNNS  360
MISPSPTSST SSCCSTSAPA PAPQVPPPPE TLSAKQLVFE AATAIADGKN EPATELLARL  420
ARISNSKGNS EQRLAYYMGN ALRSRASPSN EIVAPAPVLE LYSDEQMQAM YSLHDISPCF  480
KFGLLAANLV MLEAITSALQ EGSRVHVIDF DVGHGAQYIN LLRALAERRS QMGTAGVGSY  540
ELKVTVVETE VTNRGVMDSV KDGLMKLAER VGVNLKFESL TRKITELTHE SLGCEEGEAI  600
VVNFAFKLHR VPDESVSMEN LRDELLRRVK GLNPRAVTLV EQEMNGNTAP FLTRVNESCG  660
YYGALLDSLE ATLPRDNSDR VRVEEGLGRK MGNSIACEGR DRVERAEVFG KWRARMGMAG  720
FELKPLSQTV AESMRTKLNS ARGGNPGFTV KEESGGVGFG WMGRTLTVAS AWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-37	417	773	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010671651.1	0.0	PREDICTED: scarecrow-like protein 8
TrEMBL	A0A0K9RTG0	0.0	A0A0K9RTG0_SPIOL; Uncharacterized protein
STRING	XP_010671651.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	1e-128	SCARECROW-like 8