PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Bv3_053220_cxup.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

WRKY

Protein Properties

Length: 418aa MW: 46372.4 Da PI: 6.0217

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_053220_cxup.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.8	1.1e-28	177	235	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs++pr+YYrC+s gC+++k+vers dp++ ++tY+g+H h+ Bv3_053220_cxup.t1 177 NDKWAWRKYGQKPIKGSPYPRNYYRCSSLkGCKARKQVERSPIDPNIYIVTYTGNHYHP 235 7************************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.8E-30	163	237	IPR003657	WRKY domain
SuperFamily	SSF118290	9.81E-26	170	237	IPR003657	WRKY domain
PROSITE profile	PS50811	29.872	171	237	IPR003657	WRKY domain
SMART	SM00774	1.4E-32	176	236	IPR003657	WRKY domain
Pfam	PF03106	2.2E-24	177	235	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MGEMDINDCW SLIAVVKECT RKAKLRAQLT PENTLTTTTT TTTTTTATTR LSSFETNYAY 60 SQKQFCDQFV PSKSSAAADS STSQDELKDF YTPFLFDQDQ HGPIFSHNIK IDPVVEQGGM 120 SSNLMIEQIS QQQNLQLRNF QINKKQSSPA ISVDHPKKKK FEDRRVVRFT LEELSRNDKW 180 AWRKYGQKPI KGSPYPRNYY RCSSLKGCKA RKQVERSPID PNIYIVTYTG NHYHPCPPLR 240 NSNGSRVKYS GSDPDPPPES KTGYGSGLGG NVMKIEDEEH GDEEHSGGGG GGGGDESFGS 300 GEMDEGNTND YEILIPNSIV DSDLLTGMEQ LNGGGKISSS SHYNENVGFD EIKQHIKGCD 360 PNVNMEVQAK ESGLGYGVRI REIYATTPAT LAGPHELPSS IGQNNWDNGM IRSQSFLF

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MGEMDINDCW SLIAVVKECT RKAKLRAQLT PENTLTTTTT TTTTTTATTR LSSFETNYAY  60
SQKQFCDQFV PSKSSAAADS STSQDELKDF YTPFLFDQDQ HGPIFSHNIK IDPVVEQGGM  120
SSNLMIEQIS QQQNLQLRNF QINKKQSSPA ISVDHPKKKK FEDRRVVRFT LEELSRNDKW  180
AWRKYGQKPI KGSPYPRNYY RCSSLKGCKA RKQVERSPID PNIYIVTYTG NHYHPCPPLR  240
NSNGSRVKYS GSDPDPPPES KTGYGSGLGG NVMKIEDEEH GDEEHSGGGG GGGGDESFGS  300
GEMDEGNTND YEILIPNSIV DSDLLTGMEQ LNGGGKISSS SHYNENVGFD EIKQHIKGCD  360
PNVNMEVQAK ESGLGYGVRI REIYATTPAT LAGPHELPSS IGQNNWDNGM IRSQSFLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-17	177	238	15	75	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010671600.1	0.0	PREDICTED: probable WRKY transcription factor 27
TrEMBL	A0A0K9QIJ9	1e-136	A0A0K9QIJ9_SPIOL; Uncharacterized protein
STRING	XP_010671600.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	6e-35	WRKY DNA-binding protein 27