PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv3_052470_rpax.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | WRKY | ||||||||
Protein Properties | Length: 361aa MW: 40667.7 Da PI: 6.6272 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.3 | 2.1e-30 | 131 | 192 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ++DgynWrKYGqK++ g++fpr+YYrCt++ gC ++k+v+rs++dp+++e+tY+g+H+++ Bv3_052470_rpax.t1 131 VEDGYNWRKYGQKDILGAKFPRAYYRCTHRllqGCLATKQVQRSDDDPSFFEVTYRGKHTCS 192 58***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.263 | 126 | 189 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.2E-29 | 127 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-26 | 130 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-41 | 131 | 193 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-27 | 132 | 191 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MENNNNVNDS SPKGLVNELV EGRDLTKELQ LILSNEPRSS TNEAYGLMAK KILAKFESSI 60 QILHCDPMNH FQFQRATDDS PNSFSGSPKS QDSDGDFKDL DHKDDSKKRR ISPRITHRVQ 120 GSTSSGLEGP VEDGYNWRKY GQKDILGAKF PRAYYRCTHR LLQGCLATKQ VQRSDDDPSF 180 FEVTYRGKHT CSQASSSSSP SSYPNNLKLK LEPIETLAYP SQSQEPHKII WDFKRDNNTN 240 IVKDIKPIIT NNTNVNNLKS SSFSFPSSPA IPLFDRSTHH QTSTTMRNCS DTFVIGNGNF 300 SYTYHNNTHN IDHSQGALLQ DVVHPSSTSA TNSPVIASEL SFDHQGEFDD DFIFDNQPFF 360 Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-19 | 131 | 191 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010671912.1 | 0.0 | PREDICTED: probable WRKY transcription factor 53 | ||||
STRING | XP_010671912.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 5e-39 | WRKY family protein |