PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_051960_ggyu.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26803.3 Da    PI: 7.8713
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_051960_ggyu.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-26959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien +nrqvtfskRr+g+lKK +EL +LCda++ +iifs tgkl++y++
  Bv3_051960_ggyu.t2  9 KRIENRTNRQVTFSKRRQGLLKKTNELAILCDAQIGLIIFSGTGKLHTYPN 59
                        79***********************************************95 PP
2K-box661.3e-22831641394
               K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         +  + +qel+ L++ i+n +++ Rh+lGe+L++L l++L++ eqqLe+sl+ iR++Kn+l+ +q+e+l++ke+ lq +n ++
  Bv3_051960_ggyu.t2  83 NRDEIYQELQALREAIHNGEQSMRHYLGENLGPLPLEDLHKHEQQLESSLNIIRARKNQLMQQQLENLRRKEQLLQTDNGNM 164
                         567899***********************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.936161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-37160IPR002100Transcription factor, MADS-box
CDDcd002655.27E-40278No hitNo description
SuperFamilySSF554551.23E-30281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2282167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.56684180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGKIEMKR IENRTNRQVT FSKRRQGLLK KTNELAILCD AQIGLIIFSG TGKLHTYPNP  60
TSLEQIIQRY LHVQGIQLPL HDNRDEIYQE LQALREAIHN GEQSMRHYLG ENLGPLPLED  120
LHKHEQQLES SLNIIRARKN QLMQQQLENL RRKEQLLQTD NGNMYRWLMG DGQLHEQQQQ  180
QVIGQMPFIY GGEDQPSSST ILQLATSSSS PHQYFPYRLQ PTHPNLQDYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-17170169MEF2C
5f28_B1e-17170169MEF2C
5f28_C1e-17170169MEF2C
5f28_D1e-17170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671447.11e-168PREDICTED: MADS-box protein FBP24 isoform X1
SwissprotQ9ATE51e-72FBP24_PETHY; MADS-box protein FBP24
TrEMBLV4TC412e-75V4TC41_9ROSI; Uncharacterized protein
STRINGXP_010671447.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]