PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_051960_ggyu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 25022.2 Da    PI: 7.0871
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_051960_ggyu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.1e-26959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien +nrqvtfskRr+g+lKK +EL +LCda++ +iifs tgkl++y++
  Bv3_051960_ggyu.t1  9 KRIENRTNRQVTFSKRRQGLLKKTNELAILCDAQIGLIIFSGTGKLHTYPN 59
                        79***********************************************95 PP
2K-box48.14.8e-17831501380
               K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                         +  + +qel+ L++ i+n +++ Rh+lGe+L++L l++L++ eqqLe+sl+ iR++K++ll +   ++
  Bv3_051960_ggyu.t1  83 NRDEIYQELQALREAIHNGEQSMRHYLGENLGPLPLEDLHKHEQQLESSLNIIRARKEQLLQTDNGNM 150
                         567899*******************************************************8876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.936161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.21E-40278No hitNo description
SuperFamilySSF554551.06E-30281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014866.7E-1682146IPR002487Transcription factor, K-box
PROSITE profilePS5129711.20484178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRGKIEMKR IENRTNRQVT FSKRRQGLLK KTNELAILCD AQIGLIIFSG TGKLHTYPNP  60
TSLEQIIQRY LHVQGIQLPL HDNRDEIYQE LQALREAIHN GEQSMRHYLG ENLGPLPLED  120
LHKHEQQLES SLNIIRARKE QLLQTDNGNM YRWLMGDGQL HEQQQQQVIG QMPFIYGGED  180
QPSSSTILQL ATSSSSPHQY FPYRLQPTHP NLQDYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-18170169MEF2C
5f28_B7e-18170169MEF2C
5f28_C7e-18170169MEF2C
5f28_D7e-18170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671448.11e-158PREDICTED: MADS-box protein FBP24 isoform X2
SwissprotQ9ATE55e-63FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A1U8I9541e-64A0A1U8I954_GOSHI; protein TRANSPARENT TESTA 16-like isoform X2
STRINGXP_010671447.11e-150(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.34e-50MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]