PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_049470_nias.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRF
Protein Properties Length: 345aa    MW: 38227.2 Da    PI: 8.2801
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_049470_nias.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.98.3e-2488132145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCs++++ ++k+CErH+hrgr+rsrk++e+
  Bv3_049470_nias.t1  88 DPEPGRCRRTDGKKWRCSKEAYLDSKYCERHMHRGRNRSRKPVES 132
                         79****************************************985 PP
2QLQ63.84.4e-221046137
                 QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                        s+FT +Q+q+L++Q+l+yKyL+a++PvPp+L+++iq+
  Bv3_049470_nias.t1 10 SPFTVSQWQELEHQALIYKYLIAGLPVPPDLVLPIQN 46
                        89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-121046IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.6E-161145IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.1431146IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.73488132IPR014977WRC domain
PfamPF088791.9E-2089131IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNRESEIGVS PFTVSQWQEL EHQALIYKYL IAGLPVPPDL VLPIQNSFDS SISSSSRFFH  60
RPSLGYCSRE SSLYGIGIGY GYGGKKVDPE PGRCRRTDGK KWRCSKEAYL DSKYCERHMH  120
RGRNRSRKPV ESHSLSSSSS SCSSSSSSSS LLPVAAAALT LNQTQSVPLK FDAFASASTT  180
TGPISNSNHS QFQLDSIPYA IPTKHYPRHL QGYKPESGEN RSISQCSGGN KSLLTDSALD  240
NTWPSLSTQM SSLSHSKPKD GSSLNDDYRR HNSLINCEFG RPQTMKQSSQ SLHPFFEEWP  300
NNRETWSSME DESANQVSFS TTQLSISVPM ATSDFSTSPF SRQDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-32AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019103972.10.0PREDICTED: growth-regulating factor 4-like
TrEMBLA0A0K9QCG01e-145A0A0K9QCG0_SPIOL; Uncharacterized protein
STRINGEMJ206881e-119(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-39growth-regulating factor 5