PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_049030_urrg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 288aa    MW: 32849 Da    PI: 4.7618
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_049030_urrg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+  ++q+G  +W++ ++  g+ R++k+c++rw +yl
  Bv3_049030_urrg.t1 14 KGPWTPEEDQILISFIQQHGHSNWRALPKQSGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding50.93.6e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE++ ++++++++G++ W++Ia++++ gRt++++k+ w+++l
  Bv3_049030_urrg.t1  67 RGNFSKEEEDTIIQLHEMMGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.506961IPR017930Myb domain
SuperFamilySSF466899.35E-3111108IPR009057Homeodomain-like
SMARTSM007172.9E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-251568IPR009057Homeodomain-like
CDDcd001674.99E-111661No hitNo description
PROSITE profilePS5129425.31462116IPR017930Myb domain
SMARTSM007173.0E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1567112IPR001005SANT/Myb domain
CDDcd001679.86E-1169112No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2769117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGRAPCCDKV GLKKGPWTPE EDQILISFIQ QHGHSNWRAL PKQSGLLRCG KSCRLRWINY  60
LRPDIKRGNF SKEEEDTIIQ LHEMMGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLNQYQ  120
TTKSQGKIGR KSREINNVTT TTTTTTDSFS GTNDQVDSSP QQSSTTSCND FSSGSEVSSV  180
KFDNDTSIIN VHTYDNSIQQ SDLEYLPIID ETFWESHDNS SWDGDYNINS DFSNVIEEDN  240
DQIQFDSFLV KENSQVRYST NNGLDDSNMD FWLDVFVQAG GAPELPEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121175109B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671030.10.0PREDICTED: myb-related protein Myb4
TrEMBLA0A0K9RNI01e-102A0A0K9RNI0_SPIOL; Peroxidase
STRINGXP_010671030.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-89myb domain protein 15