PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Bv3_048020_atyd.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

FAR1

Protein Properties

Length: 760aa MW: 86961.1 Da PI: 6.3647

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_048020_atyd.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.3	3.9e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k++ +w+vt ++++HnH Bv3_048020_atyd.t2 63 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQAKPTEEGKLQRNRKSSRCGCQAYMRIVKRSdfdVPEWRVTGFSNNHNH 153 6*************9998874556679***************99**************99998776789********** PP FAR1 88 ela 90 el Bv3_048020_atyd.t2 154 ELI 156 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-18	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.4E-19	279	373	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.916	555	591	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-6	557	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-4	566	593	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MQQEMTENEN QDLESSENDT DLSQDNVGSI EEIPDDTILL RQTSVNLVPF IGQRFVSQDA 60 AYEFYCSFAK QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQAKPTE EGKLQRNRKS 120 SRCGCQAYMR IVKRSDFDVP EWRVTGFSNN HNHELIKSFE VHILPSHCTI SADDKSRVCM 180 FAKAGMSARQ MLRLLEIEKG VKLGCLPYSE LDIRNLLQSF RHVDNDNDAI DLVGMCKRLK 240 DENSEFKYEF KLDGRNRLEH IAWSYPSSVQ QYEAFGDAIL LDTTHRLDAY DMLLGLWIGV 300 DNHGMACLYS CVLLRNENLQ SFIWALKTFL CFMKGKAPPQ TILTDQNMWL KEAIACEMRE 360 TKHAFSIWHI MANFSDWFSL PLESHYDDWK AEFYRLYSLE MVDEFEAGWT EMVDRYGLQS 420 NKHIISLYAL RNFWALSFLR RYFFAGLMSK SVTDSINAFI QRVLNAQSKL DCFIEKVADI 480 AEYGEQARSK LKMQQLPKVS LKTGSPMESH AATVLTPFAF SLLQEELVLA PQFASILVGE 540 GCFHIRHHTE MDGGCKVMLD PQQELIHCSC HQFEFLGILC RHILRVLSTN NCFHIPDNYL 600 PLRWRLVPKE HIEKEQSEKV KILASLASTI LSESAATEER LSFACEQMSM VLSHVKQLPR 660 LSCHHHMNEM GFNSPSGSLM VPEVEDSDGI VQSFNLGNLH ESLLDKLKEG NPNSEAGNIM 720 SRKRRRCSFP CCGQFGHDAS DCPIMESDSL RSDGDALGFL

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MQQEMTENEN QDLESSENDT DLSQDNVGSI EEIPDDTILL RQTSVNLVPF IGQRFVSQDA  60
AYEFYCSFAK QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQAKPTE EGKLQRNRKS  120
SRCGCQAYMR IVKRSDFDVP EWRVTGFSNN HNHELIKSFE VHILPSHCTI SADDKSRVCM  180
FAKAGMSARQ MLRLLEIEKG VKLGCLPYSE LDIRNLLQSF RHVDNDNDAI DLVGMCKRLK  240
DENSEFKYEF KLDGRNRLEH IAWSYPSSVQ QYEAFGDAIL LDTTHRLDAY DMLLGLWIGV  300
DNHGMACLYS CVLLRNENLQ SFIWALKTFL CFMKGKAPPQ TILTDQNMWL KEAIACEMRE  360
TKHAFSIWHI MANFSDWFSL PLESHYDDWK AEFYRLYSLE MVDEFEAGWT EMVDRYGLQS  420
NKHIISLYAL RNFWALSFLR RYFFAGLMSK SVTDSINAFI QRVLNAQSKL DCFIEKVADI  480
AEYGEQARSK LKMQQLPKVS LKTGSPMESH AATVLTPFAF SLLQEELVLA PQFASILVGE  540
GCFHIRHHTE MDGGCKVMLD PQQELIHCSC HQFEFLGILC RHILRVLSTN NCFHIPDNYL  600
PLRWRLVPKE HIEKEQSEKV KILASLASTI LSESAATEER LSFACEQMSM VLSHVKQLPR  660
LSCHHHMNEM GFNSPSGSLM VPEVEDSDGI VQSFNLGNLH ESLLDKLKEG NPNSEAGNIM  720
SRKRRRCSFP CCGQFGHDAS DCPIMESDSL RSDGDALGFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	721	725	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010670905.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
Refseq	XP_010670906.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0K9QE15	0.0	A0A0K9QE15_SPIOL; Uncharacterized protein
STRING	XP_010670905.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]