PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Regulation |

Basic Information? help Back to Top

TF ID

Bv2_046860_ofna.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Dof

Protein Properties

Length: 479aa MW: 52428 Da PI: 4.9675

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_046860_ofna.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.5e-40	122	182	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Bv2_046860_ofna.t1 122 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 182 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	120	179	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.7E-32	124	180	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	126	180	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	128	164	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MADPAIKLFG KTIPLQDNDN DNDDHSIPSD STNTEDHISK DTVFEERENH KVDEDGNTLQ 60 TKQNGVSPEV SDKSICQDAS LVTPDIPEAL SNVDEKEAGE SSKSEEEKAE TSPSQEKTPK 120 KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP VGAGRRKNKN 180 SASHYRNITI PEALQNARTE IPNGLHPALP NNGMVLTFSS DSPLCESMAS ILNLAEKPVR 240 NCPPNAFQKP EDLKVSIPFA GLESGVNHDD GSNSKDDASK SAAPNEPAAQ NCLPFPAQIP 300 CYPGAPWPYP WNSTQWSPPV AAPPFCPNGF AMPFYPAPAY WGCAVPGAWN IPWIAQPSPP 360 SNSNPSSAPT SPLGKHSRDG NMLTSTNSED KEVEENSSER SLWIPKTLRI DDPGEAAKSS 420 IWSTLGIKNN EKPESIGRGF GLFKAFQSKR EGNTRMETSP VLEANPAALS RSQNFQENT

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MADPAIKLFG KTIPLQDNDN DNDDHSIPSD STNTEDHISK DTVFEERENH KVDEDGNTLQ  60
TKQNGVSPEV SDKSICQDAS LVTPDIPEAL SNVDEKEAGE SSKSEEEKAE TSPSQEKTPK  120
KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP VGAGRRKNKN  180
SASHYRNITI PEALQNARTE IPNGLHPALP NNGMVLTFSS DSPLCESMAS ILNLAEKPVR  240
NCPPNAFQKP EDLKVSIPFA GLESGVNHDD GSNSKDDASK SAAPNEPAAQ NCLPFPAQIP  300
CYPGAPWPYP WNSTQWSPPV AAPPFCPNGF AMPFYPAPAY WGCAVPGAWN IPWIAQPSPP  360
SNSNPSSAPT SPLGKHSRDG NMLTSTNSED KEVEENSSER SLWIPKTLRI DDPGEAAKSS  420
IWSTLGIKNN EKPESIGRGF GLFKAFQSKR EGNTRMETSP VLEANPAALS RSQNFQENT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693252.1	0.0	PREDICTED: cyclic dof factor 2 isoform X1
TrEMBL	A0A0K9QDN9	0.0	A0A0K9QDN9_SPIOL; Uncharacterized protein
STRING	XP_010693252.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-103	cycling DOF factor 2