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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv2_046820_pxaz.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | ZF-HD | ||||||||
Protein Properties | Length: 97aa MW: 10257.3 Da PI: 8.2424 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.8 | 4.1e-31 | 28 | 82 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++v YkeC++NhAa++G havDGC Efmps g++gt +al CaACgCHRnFHRre Bv2_046820_pxaz.t1 28 SRVSYKECQRNHAANTGRHAVDGCTEFMPS-GDDGTEHALVCAACGCHRNFHRREA 82 5799*************************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-18 | 30 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.0E-29 | 30 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.8E-26 | 32 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.134 | 32 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MAKNSKLVIL RSSHGRSSMD SGGFAVSSRV SYKECQRNHA ANTGRHAVDG CTEFMPSGDD 60 GTEHALVCAA CGCHRNFHRR EAGSVVDSSP ANSSTTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021721485.1 | 1e-27 | mini zinc finger protein 3-like | ||||
Swissprot | Q9SB61 | 9e-24 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | B9RLZ3 | 6e-26 | B9RLZ3_RICCO; Transcription factor, putative | ||||
STRING | XP_002514762.1 | 1e-26 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-26 | homeobox protein 22 |
Publications ? help Back to Top | |||
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