PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_046820_pxaz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ZF-HD
Protein Properties Length: 97aa    MW: 10257.3 Da    PI: 8.2424
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_046820_pxaz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.84.1e-312882257
         ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        ++v YkeC++NhAa++G havDGC Efmps g++gt +al CaACgCHRnFHRre 
  Bv2_046820_pxaz.t1 28 SRVSYKECQRNHAANTGRHAVDGCTEFMPS-GDDGTEHALVCAACGCHRNFHRREA 82
                        5799*************************9.999********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-183084IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.0E-293081IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.8E-263281IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.1343281IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MAKNSKLVIL RSSHGRSSMD SGGFAVSSRV SYKECQRNHA ANTGRHAVDG CTEFMPSGDD  60
GTEHALVCAA CGCHRNFHRR EAGSVVDSSP ANSSTTT
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021721485.11e-27mini zinc finger protein 3-like
SwissprotQ9SB619e-24ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLB9RLZ36e-26B9RLZ3_RICCO; Transcription factor, putative
STRINGXP_002514762.11e-26(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-26homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]