PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_046810_kyom.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

ZF-HD

Protein Properties

Length: 86aa MW: 9625.71 Da PI: 7.4249

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_046810_kyom.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	79.3	4.8e-25	22	71	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +v+Y eC++Nh a++Gg+avDGC+Efmps + + l CaACgCH nFHR ++ Bv2_046810_kyom.t1 22 SVKYGECQRNHVAHVGGYAVDGCREFMPS-----EEHYLLCAACGCHCNFHRNRE 71 699***********************9.....3467************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-14	18	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.3E-21	23	71	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.8E-18	24	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.551	25	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MSSKRGVLRR SQVNNSDFLV RSVKYGECQR NHVAHVGGYA VDGCREFMPS EEHYLLCAAC 60 GCHCNFHRNR EVDLEVSVES SSSSTT

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022751923.1	2e-25	mini zinc finger protein 2-like
Refseq	XP_022751924.1	2e-25	mini zinc finger protein 2-like
Swissprot	Q9LJW5	7e-21	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	A0A1R3GV65	1e-23	A0A1R3GV65_9ROSI; Uncharacterized protein
TrEMBL	A0A438HDX6	1e-23	A0A438HDX6_VITVI; Mini zinc finger protein 2
STRING	XP_007138185.1	3e-24	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	1e-20	mini zinc finger 2

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]