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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv2_046810_kyom.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | ZF-HD | ||||||||
Protein Properties | Length: 86aa MW: 9625.71 Da PI: 7.4249 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 79.3 | 4.8e-25 | 22 | 71 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +v+Y eC++Nh a++Gg+avDGC+Efmps + + l CaACgCH nFHR ++ Bv2_046810_kyom.t1 22 SVKYGECQRNHVAHVGGYAVDGCREFMPS-----EEHYLLCAACGCHCNFHRNRE 71 699*************************9.....3467**************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-14 | 18 | 73 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.3E-21 | 23 | 71 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.8E-18 | 24 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.551 | 25 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MSSKRGVLRR SQVNNSDFLV RSVKYGECQR NHVAHVGGYA VDGCREFMPS EEHYLLCAAC 60 GCHCNFHRNR EVDLEVSVES SSSSTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022751923.1 | 2e-25 | mini zinc finger protein 2-like | ||||
Refseq | XP_022751924.1 | 2e-25 | mini zinc finger protein 2-like | ||||
Swissprot | Q9LJW5 | 7e-21 | MIF2_ARATH; Mini zinc finger protein 2 | ||||
TrEMBL | A0A1R3GV65 | 1e-23 | A0A1R3GV65_9ROSI; Uncharacterized protein | ||||
TrEMBL | A0A438HDX6 | 1e-23 | A0A438HDX6_VITVI; Mini zinc finger protein 2 | ||||
STRING | XP_007138185.1 | 3e-24 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 1e-20 | mini zinc finger 2 |
Publications ? help Back to Top | |||
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