PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_046530_kcci.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 93aa    MW: 10705 Da    PI: 8.5138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_046530_kcci.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-0823601855
                        HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        +  ++L++l+P+ + + +s K+s + +L+++++YI++Lq
  Bv2_046530_kcci.t1 23 QLVSKLQQLVPEvR-QRRSDKVSASKVLQETCNYIRNLQ 60
                        55689*******65.9**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.947559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-82174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-52360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-82377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRQQQ SGSSRISDDQ IIQLVSKLQQ LVPEVRQRRS DKVSASKVLQ ETCNYIRNLQ  60
REMDDLSDRL SQLLTTVDAD SEEAQIIRSL LNN
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693223.19e-58PREDICTED: transcription factor PRE6
SwissprotQ9LJX14e-38PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A445B3823e-45A0A445B382_ARAHY; Uncharacterized protein
STRINGXP_010693223.13e-57(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-34bHLH family protein