PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_042870_fzxy.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

HB-other

Protein Properties

Length: 358aa MW: 40200.2 Da PI: 4.5783

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_042870_fzxy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.9e-09	289	336	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k qle+Le+++++++ p+ +++ + + ++L+ +V WF +Ra Bv2_042870_fzxy.t1 289 RLKKVQLETLENVYRRTKRPTNTMISSIVHVTNLPRLKVVKWFEDKRA 336 57899******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.086	281	341	IPR001356	Homeobox domain
CDD	cd00086	1.77E-6	284	336	No hit	No description
SuperFamily	SSF46689	4.71E-9	285	344	IPR009057	Homeodomain-like
SMART	SM00389	1.5E-4	287	345	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.0E-8	289	343	IPR009057	Homeodomain-like
Pfam	PF00046	8.0E-7	289	337	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002229	Biological Process	defense response to oomycetes
GO:0009414	Biological Process	response to water deprivation
GO:0009682	Biological Process	induced systemic resistance
GO:0009787	Biological Process	regulation of abscisic acid-activated signaling pathway
GO:0010118	Biological Process	stomatal movement
GO:0050832	Biological Process	defense response to fungus
GO:2000022	Biological Process	regulation of jasmonic acid mediated signaling pathway
GO:2000071	Biological Process	regulation of defense response by callose deposition
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MRLTCIHNNS PSITLSSSTS SSSQSHTNLF SSVNPKPSYL SLPRVPLSRS VLTLARRRSN 60 SSRPITSPSK KNKSRKGVDS NKEEDVNEDA FEALFKQLEE DLKADEQLLD DGEDEISEEE 120 LAMLERELEE ALAEDESISH LLNLTPNDAV EGEEVEEQME DEVGEDDVDD EEEEEPITLK 180 GWQLRRLAYA LKAGRRKTSI KNLAAELCLD RAIVLELLRD PPPKLLMMSA TLPDKPKPPI 240 AIPVSEDMPS VPPEVLVPSE VVADDSAPPE PKVETPIHVL QDSWSAQKRL KKVQLETLEN 300 VYRRTKRPTN TMISSIVHVT NLPRLKVVKW FEDKRAAEGV PEQQRPFRRS SSESVTAQ

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MRLTCIHNNS PSITLSSSTS SSSQSHTNLF SSVNPKPSYL SLPRVPLSRS VLTLARRRSN  60
SSRPITSPSK KNKSRKGVDS NKEEDVNEDA FEALFKQLEE DLKADEQLLD DGEDEISEEE  120
LAMLERELEE ALAEDESISH LLNLTPNDAV EGEEVEEQME DEVGEDDVDD EEEEEPITLK  180
GWQLRRLAYA LKAGRRKTSI KNLAAELCLD RAIVLELLRD PPPKLLMMSA TLPDKPKPPI  240
AIPVSEDMPS VPPEVLVPSE VVADDSAPPE PKVETPIHVL QDSWSAQKRL KKVQLETLEN  300
VYRRTKRPTN TMISSIVHVT NLPRLKVVKW FEDKRAAEGV PEQQRPFRRS SSESVTAQ

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010670653.1	0.0	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
Swissprot	Q8H0V5	9e-76	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	A0A0K9RB51	1e-136	A0A0K9RB51_SPIOL; Uncharacterized protein
STRING	XP_010670653.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	1e-65	overexpressor of cationic peroxidase 3

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]