PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_038830_huqy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 329aa    MW: 37269.5 Da    PI: 6.5023
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_038830_huqy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+lv  ++ +G  +W+++++  g+ R++k+c++rw +yl
  Bv2_038830_huqy.t1 13 RGLWSPEEDEKLVSHITIHGHSSWSSVPKLAGLQRCGKSCRLRWINYL 60
                        788*******************************************97 PP
2Myb_DNA-binding52.98.4e-1766109146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++T+eE+  ++++++ lG++ W+ Ia++++ gRt++++k++w++
  Bv2_038830_huqy.t1  66 RGSFTEEEERSIIEVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                         89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-25463IPR009057Homeodomain-like
PROSITE profilePS5129416.68860IPR017930Myb domain
SuperFamilySSF466894.4E-2910107IPR009057Homeodomain-like
SMARTSM007171.6E-111262IPR001005SANT/Myb domain
PfamPF002492.3E-141360IPR001005SANT/Myb domain
CDDcd001673.53E-101660No hitNo description
PROSITE profilePS5129426.69361115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2564115IPR009057Homeodomain-like
SMARTSM007173.9E-1665113IPR001005SANT/Myb domain
PfamPF002499.6E-1666109IPR001005SANT/Myb domain
CDDcd001672.58E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLVSHITI HGHSSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT EEEERSIIEV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGL  120
DPNTHNLLPS NKKKSKTSNK TTKFPNYHHP ISSNSTTLVF SNDHDQSQTC YSPNDKTVLQ  180
NTINFDCNSN VTQVYDNNAP ITELSTQFLA SSSSMNISNS FSNDVNLCEY VVDEDSIWST  240
TTTSLENFEQ PTEITQVMVQ QDTIGSDQDL DTSLFNMLSL NYGFEDHDFP SNIVRSTGVY  300
DDMASGMDQV AWCNKSITSP SLNNMSYLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-32131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670059.10.0PREDICTED: transcription repressor MYB6
TrEMBLA0A2R6QMA19e-92A0A2R6QMA1_ACTCH; Transcription factor like
STRINGXP_010670059.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-84myb domain protein 67